YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24345961, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	424 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24345961, gi|....

Description	E-value	Query Range	Subject Range
gi\|11282468, gi\|... - gi\|3850615\|emb\|CAA05519.1\| nosD [Bradyrhizobium japonicum], pir\|\|T44661 nosD protein [imported] - Br...	308.0	[0..3]	[423..7]
gi\|27348564, gi\|... - gi\|27375427\|ref\|NP_766956.1\| periplasmic copper-binding precursor [Bradyrhizobium japonicum USDA 110...	308.0	[0..3]	[423..7]
gi\|17431843 - gi\|17431843\|emb\|CAD18521.1\| probable periplasmic copper-binding nosd signal peptide protein [Ralston... gi\|17549589 - gi\|17549589\|ref\|NP_522929.1\| copper-binding periplasmic NOSD signal peptide protein [Ralstonia solan...	305.0	[0..1]	[418..1]
gi\|48771827, gi\|... - gi\|94313837\|ref\|YP_587046.1\| periplasmic copper-binding [Ralstonia metallidurans CH34], gi\|93357689\|...	302.0	[0..1]	[418..1]
gi\|21623499 - gi\|21623499\|dbj\|BAC00875.1\| NosD [Pseudomonas sp. MT-1]	302.0	[0..20]	[421..22]
gi\|77698230, gi\|... - gi\|77741817\|ref\|ZP_00810298.1\| IMP dehydrogenase/GMP reductase:Periplasmic copper-binding [Rhodopseu...	298.0	[0..15]	[421..23]
gi\|84326045 - gi\|84326045\|ref\|ZP_00974076.1\| COG4263: Nitrous oxide reductase [Pseudomonas aeruginosa 2192]	298.0	[0..37]	[419..675]
NOSD_PSEST - Copper-binding periplasmic protein OS=Pseudomonas stutzeri GN=nosD PE=4 SV=2	297.0	[0..5]	[420..13]
gi\|86750254, gi\|... - gi\|86750254\|ref\|YP_486750.1\| periplasmic copper-binding [Rhodopseudomonas palustris HaA2], gi\|865732...	294.0	[0..1]	[422..5]
gi\|222110271, gi... - gi\|222110271\|ref\|YP_002552535.1\| periplasmic copper-binding [Diaphorobacter sp. TPSY], gi\|221729715\|... gi\|110595043, gi... - gi\|121593550\|ref\|YP_985446.1\| periplasmic copper-binding [Acidovorax sp. JS42], gi\|120605630\|gb\|ABM4...	293.0	[0..5]	[417..8]

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Predicted Domain #1

Region A:
Residues: [1-424]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRLLLLCWL CGVSFIGGAQ ELRVKDTASL TQALVQAQDG DTLVLDTAVY EGNFSVTRSI  60
   61 HIKGEAGATL DAQRQGSALT ITAPKVIVEG LNIRHWGRDL YYHDAGILLL PGADEVLIKG 120
  121 NRFVGDGFGI YGEQLASPRI IENSISGNGA IYVLDRGDGI FLKHVTAPDV QQNHIIFVRD 180
  181 GVYLESVTDS KIHHNQFAKL QYGIHYMYTR GDEASQNQAT SVDGGYALMN SQQIYLHHNR 240
  241 VSQARDFGIL LNITNDSHVQ ANIATEVQHP QGSVELGNEG KGIFIYAAQN NRIEDNEFSQ 300
  301 SDTGISMAMG GEANRLWHNR ILGNQTQVKY VGEAQLEWSY QGQGNYWSEY RGWDTNGDGV 360
  361 GDIAHRPNDS LDKLFWLYPE AKLLMESPVV LLLRWVERQF QPTSISGVSD SFPLMRLITE 420
  421 GDGI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.0
Match:	2uveA
Description:	No description for 2uveA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits