YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372079, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	163 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372079, gi|....

Description	E-value	Query Range	Subject Range
gi\|2145512, gi\|1... - pir\|\|S65468 nosL protein precursor - Pseudomonas stutzeri, gi\|1589091\|prf\|\|2210284A protein disulfi...	194.0	[0..4]	[160..11]
gi\|21623502 - gi\|21623502\|dbj\|BAC00878.1\| NosL [Pseudomonas sp. MT-1]	192.0	[0..3]	[160..9]
gi\|77813867, gi\|... - gi\|77813867\|ref\|ZP_00813138.1\| nosL protein [Shewanella putrefaciens CN-32], gi\|77811112\|gb\|EAO95486... gi\|120597412, gi... - gi\|82741087\|ref\|ZP_00903816.1\| NosL protein [Shewanella sp. W3-18-1], gi\|82721566\|gb\|EAP56403.1\| Nos...	191.0	[0..1]	[163..1]
gi\|82496876, gi\|... - gi\|82496876\|ref\|ZP_00882439.1\| NosL protein [Shewanella sp. MR-4], gi\|82405150\|gb\|EAP45827.1\| NosL p...	189.0	[0..1]	[163..1]
gi\|78508003, gi\|... - gi\|78684251\|ref\|ZP_00849036.1\| NosL protein [Shewanella sp. ANA-3], gi\|78508003\|gb\|EAP21511.1\| NosL ...	188.0	[0..1]	[163..1]
gi\|78688556, gi\|... - gi\|78688556\|ref\|ZP_00853224.1\| NosL protein [Shewanella sp. MR-7], gi\|78511937\|gb\|EAP25291.1\| NosL p...	188.0	[0..1]	[163..1]
gi\|90324504, gi\|... - gi\|90414391\|ref\|ZP_01222368.1\| hypothetical nosL protein [Photobacterium profundum 3TCK], gi\|9032450...	188.0	[0..3]	[159..8]
gi\|46915952, gi\|... - gi\|54302530\|ref\|YP_132523.1\| protein disulfide isomerase NosL [Photobacterium profundum SS9], gi\|469...	188.0	[0..3]	[159..8]
gi\|113909555, gi... - gi\|160877100\|ref\|YP_001556416.1\| NosL family protein [Shewanella baltica OS195], gi\|160862622\|gb\|ABX...	188.0	[0..1]	[163..1]
gi\|71841671 - gi\|71841671\|gb\|AAZ43123.1\| NosL [Pseudomonas stutzeri] gi\|71841671, gi\|... - gi\|71841671\|gb\|AAZ43123.1\| NosL [Pseudomonas stutzeri], gi\|146283863\|ref\|YP_001174016.1\| lipoprotein...	184.0	[0..17]	[160..24]

Back

Predicted Domain #1

Region A:
Residues: [1-163]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKFFGLLLL LPLLLGCNKS EATDHQHKAE MIHEHDRCHL CGMVITKYPG PKGQVHLKAE  60
   61 KMVPKFCSSR DMFNFALQPE NKRQIDYMMV HDAAATDWDQ PDDGAFIDAA SAFYVYGTSK 120
  121 KAVMGPAVAP FSTKAAAEAF AKEYGGRVLT FDDITLELLA GDK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.522879
Match:	2hpuA
Description:	No description for 2hpuA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits