YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24345959, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	311 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24345959, gi|....

Description	E-value	Query Range	Subject Range
gi\|68206078, gi\|... - gi\|68206078\|ref\|ZP_00558272.1\| Polysulphide reductase, NrfD [Desulfitobacterium hafniense DCB-2], gi...	205.0	[0..1]	[311..3]
gi\|89897649, gi\|... - gi\|89897649\|ref\|YP_521136.1\| putative oxidoreductase membrane subunit [Desulfitobacterium hafniense ...	204.0	[0..1]	[311..3]
gi\|83855682, gi\|... - gi\|83855682\|ref\|ZP_00949211.1\| molybdopterin oxidoredutase membrane subunit [Croceibacter atlanticus...	203.0	[0..4]	[306..65]
gi\|34482529 - gi\|34482529\|emb\|CAE09529.1\| PUTATIVE NITRATE REDUCTASE, FORMATE DEPENDENT [Wolinella succinogenes] gi\|34556814 - gi\|34556814\|ref\|NP_906629.1\| putative nitrate reductase, formate dependent [Wolinella succinogenes D...	202.0	[0..1]	[311..5]
gi\|91227193, gi\|... - gi\|91227193\|ref\|ZP_01261652.1\| nitrate reductase, formate dependent (NrfD) [Vibrio alginolyticus 12G...	201.0	[0..9]	[307..11]
gi\|75854131, gi\|... - gi\|75854131\|ref\|ZP_00761845.1\| COG3301: Formate-dependent nitrite reductase, membrane component [Vib...	200.0	[0..9]	[307..11]
gi\|28806918 - gi\|28806918\|dbj\|BAC60189.1\| nitrate reductase, formate dependent (NrfD) [Vibrio parahaemolyticus RIM... gi\|149746174, gi... - gi\|153840174\|ref\|ZP_01992841.1\| cytochrome c nitrite reductase, NrfD subunit [Vibrio parahaemolyticu... gi\|28806918, gi\|... - gi\|28898700\|ref\|NP_798305.1\| nitrate reductase, formate dependent (NrfD) [Vibrio parahaemolyticus RI...	196.0	[0..9]	[307..11]
gi\|86131980, gi\|... - gi\|86131980\|ref\|ZP_01050576.1\| molybdopterin oxidoredutase membrane subunit [Cellulophaga sp. MED134...	194.0	[0..5]	[306..67]
gi\|78688555, gi\|... - gi\|78688555\|ref\|ZP_00853223.1\| formate-dependent nitrite reductase, NrfD protein [Shewanella sp. MR-...	194.0	[0..1]	[311..5]
gi\|52307923, gi\|... - gi\|52425871\|ref\|YP_089008.1\| NrfD protein [Mannheimia succiniciproducens MBEL55E], gi\|52307923\|gb\|AA...	194.0	[0..7]	[307..11]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFTLGLSQG VAWPWPIAVY LFFAGISGGA LTIALALRFY LGQVENTAFL KAATLLSFVT  60
   61 ISLGMLCLVL DLTNPLFFWR ILVFYNLNSV MSIGVIALSV YIPLVAVVAL LALEKELMA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [120-311]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPQLKFLAPI IAKLKGFRRP MEALALVLAL SVCAYTGFLI SALIRFPLIN TSVLPALFIA  60
   61 SGLSAGGASA KMLAVWLFKE PLHSGEMKIL HGAEWPIMFA EAMFIFMIAT ALLTGNAGGQ 120
  121 FAFAAFHEGV WASVFWIGVV GIGFAAPLLL NFATGKHFSH SAKAFYMSGM CAVVGMMCLR 180
  181 LFILLAGQNY AI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits