YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372076, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	224 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372076, gi|....

Description	E-value	Query Range	Subject Range
gi\|71675440, gi\|... - gi\|71675440\|ref\|ZP_00673185.1\| TPR repeat:Sel1-like repeat [Trichodesmium erythraeum IMS101], gi\|716...	179.0	[0..7]	[222..1046]
gi\|72397563, gi\|... - gi\|73670401\|ref\|YP_306416.1\| hypothetical protein Mbar_A2941 [Methanosarcina barkeri str. Fusaro], g...	176.0	[0..6]	[222..344]
gi\|72002781, gi\|... - gi\|72382931\|ref\|YP_292286.1\| TPR repeat-containing protein [Prochlorococcus marinus str. NATL2A], gi...	174.0	[0..4]	[222..132]
gi\|40063048 - gi\|40063048\|gb\|AAR37904.1\| TPR domain protein [uncultured marine bacterium 560]	171.0	[0..4]	[222..57]
gi\|76659287 - gi\|76659287\|ref\|XP_885188.1\| PREDICTED: similar to O-linked GlcNAc transferase isoform 1 isoform 13 ...	167.0	[0..7]	[222..119]
gi\|40063717 - gi\|40063717\|gb\|AAR38498.1\| TPR repeat protein [uncultured marine bacterium 583]	166.0	[0..7]	[222..62]
gi\|18250916, gi\|... - gi\|6911265\|gb\|AAF31458.1\| HRNT1 [Homo sapiens], gi\|2266994\|gb\|AAB63466.1\| O-linked GlcNAc transferas...	165.0	[0..7]	[222..118]

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Predicted Domain #1

Region A:
Residues: [1-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLGFTIAL LLSGFVAWIF WQHARLNQLQ TVARLPLVSH WLPVLCSGVL LAMTLAIYSQ  60
   61 TGRYSDWDKG KLDEHIDYLV AADITKALRL VDAEPKNPLA LMSLAQAYSA GGKYGDAVQT 120
  121 LDKLLALTPE DAEVLGAKAN ALYYRDRRQM TPETLEVIAK ALVLSPFEPQ TKMLLATDAY 180
  181 LHTRYQEAID HWQSLLTQAS GRVNRDAINN AIQKAQIKLN ESGY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.522879
Match:	1w3bA
Description:	The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits