YRC Public Data Repository - Protein Structure Prediction

Protein:	UBIA_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	286 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBIA_SHEON.

Description	E-value	Query Range	Subject Range
3825.m02509, 128... - /numExons=12 /strand=- /begin=98461 /end=104446 /seqFile=euttg.scaffolds.fasta /startCodon=0 /coords... gi\|89295687, gi\|... - gi\|89295687\|gb\|EAR93675.1\| 4-hydroxybenzoate polyprenyl transferase family protein [Tetrahymena ther...	222.0	[0..3]	[286..972]
gi\|71005862, gi\|... - gi\|71005862\|ref\|XP_757597.1\| hypothetical protein UM01450.1 [Ustilago maydis 521], ref\|XP_399065.1\| ...	213.0	[0..7]	[284..632]
Coq2-PA - The gene Coenzyme Q biosynthesis protein 2 is referred to in FlyBase by the symbol Dmel\Coq2 (CG9613... gi\|220949886 - gi\|220949886\|gb\|ACL87486.1\| Coq2-PA [synthetic construct]	211.0	[0..3]	[285..73]
COQ2_DROPS - 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=... gi\|125775189, gi... - gi\|54638587\|gb\|EAL27989.1\| GA21912 [Drosophila pseudoobscura pseudoobscura], gi\|125775189\|ref\|XP_001...	210.0	[0..8]	[285..84]
COQ2_AEDAE - 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Aedes aegypti GN=coq2 PE=3 SV=1	210.0	[0..9]	[286..118]
gi\|114593901 - gi\|114593901\|ref\|XP_526592.2\| PREDICTED: para-hydroxybenzoate-polyprenyltransferase, mitochondrial i...	209.0	[0..2]	[286..116]
COQ2_BOVIN - 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Bos taurus GN=COQ2 PE=2 SV=1	207.0	[0..2]	[285..66]
gi\|52138578, gi\|... - gi\|52138578\|ref\|NP_056512.3\| para-hydroxybenzoate-polyprenyltransferase, mitochondrial [Homo sapiens...	207.0	[0..2]	[286..116]
UBIA_SACD2 - 4-hydroxybenzoate octaprenyltransferase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM ...	206.0	[0..3]	[285..14]
gi\|115732277, gi... - gi\|115898775\|ref\|XP_792747.2\| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus], gi\|11...	205.0	[0..3]	[285..57]

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Predicted Domain #1

Region A:
Residues: [1-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLKHKWDVY SRLTRLDRPI GTLLLLWPCL MALVLAAGGM PDLKVLIIFI IGVVIMRACG  60
   61 CIINDYADRD LDSHVERTKS RPLASGEIST KEALLLFVIL GLAAFGLVLL LNGLVVKLSV 120
  121 VGIILTIIYP FTKRVTNMPQ MFLGVVWSWS IPMAYAAQTG EVPIEAWWLF AANWFWTVAY 180
  181 D

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [182-286]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TMYAMVDRDD DLKIGIKSTA ILFGKYDRQI IGLFQIAALF CFVAAGWSAD RGLVYGLGLL  60
   61 TFVGFSTYQQ MLIFGRERAP CFKAFLNNNW AGLVLFVSLG ADYLF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits