YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372062, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	722 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372062, gi|....

Description	E-value	Query Range	Subject Range
gi\|2625021 - gi\|2625021\|gb\|AAC46278.1\| DNA helicase II [Serratia marcescens]	632.0	[0..1]	[720..1]
gi\|82405130, gi\|... - gi\|82496856\|ref\|ZP_00882419.1\| ATP-dependent DNA helicase UvrD [Shewanella sp. MR-4], gi\|82405130\|gb...	632.0	[0..1]	[722..1]
gi\|78687366, gi\|... - gi\|78687366\|ref\|ZP_00852116.1\| ATP-dependent DNA helicase UvrD [Shewanella sp. ANA-3], gi\|78504866\|g...	631.0	[0..1]	[722..1]
gi\|78688534, gi\|... - gi\|78688534\|ref\|ZP_00853202.1\| ATP-dependent DNA helicase UvrD [Shewanella sp. MR-7], gi\|78511915\|gb...	629.0	[0..1]	[722..1]
gi\|146866176, gi... - gi\|217974967\|ref\|YP_002359718.1\| DNA-dependent helicase II [Shewanella baltica OS223], gi\|217500102\|... gi\|125995898, gi... - gi\|68542618\|ref\|ZP_00582345.1\| ATP-dependent DNA helicase UvrD [Shewanella baltica OS155], gi\|685197...	628.0	[0..1]	[721..1]
gi\|82741100, gi\|... - gi\|82741100\|ref\|ZP_00903829.1\| ATP-dependent DNA helicase UvrD [Shewanella sp. W3-18-1], gi\|82721579... gi\|145566150, gi... - gi\|77813880\|ref\|ZP_00813151.1\| ATP-dependent DNA helicase UvrD [Shewanella putrefaciens CN-32], gi\|7...	628.0	[0..1]	[721..1]
gi\|113909574, gi... - gi\|160877119\|ref\|YP_001556435.1\| DNA-dependent helicase II [Shewanella baltica OS195], gi\|160862641\|...	628.0	[0..1]	[721..1]
gi\|75177773 - gi\|75177773\|ref\|ZP_00697838.1\| COG0210: Superfamily I DNA and RNA helicases [Shigella boydii BS512]	628.0	[0..1]	[720..19]
gi\|75238266 - gi\|75238266\|ref\|ZP_00722265.1\| COG0210: Superfamily I DNA and RNA helicases [Escherichia coli E11001... gi\|75197699 - gi\|75197699\|ref\|ZP_00707769.1\| COG0210: Superfamily I DNA and RNA helicases [Escherichia coli HS]	628.0	[0..1]	[720..19]
gi\|238912954 - gi\|238912954\|ref\|ZP_04656791.1\| DNA-dependent helicase II [Salmonella enterica subsp. enterica serov... gi\|56130062, gi\|... - gi\|56415805\|ref\|YP_152880.1\| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar ... gi\|62130053, gi\|... - gi\|62182420\|ref\|YP_218837.1\| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar ... gi\|224470294, gi... - gi\|224585766\|ref\|YP_002639565.1\| DNA helicase II [Salmonella enterica subsp. enterica serovar Paraty... gi\|206710956, gi... - gi\|207859153\|ref\|YP_002245804.1\| DNA-dependent helicase II [Salmonella enterica subsp. enterica sero... gi\|204930325, gi... - gi\|204930325\|ref\|ZP_03221302.1\| DNA helicase II [Salmonella enterica subsp. enterica serovar Javiana... gi\|200388338, gi... - gi\|200388338\|ref\|ZP_03214950.1\| DNA helicase II [Salmonella enterica subsp. enterica serovar Virchow... gi\|198245946, gi... - gi\|198245946\|ref\|YP_002217880.1\| DNA helicase II [Salmonella enterica subsp. enterica serovar Dublin... gi\|197364735, gi... - gi\|197364735\|ref\|YP_002144372.1\| DNA-dependent helicase II [Salmonella enterica subsp. enterica sero... gi\|194734777, gi... - gi\|194734777\|ref\|YP_002116880.1\| DNA helicase II [Salmonella enterica subsp. enterica serovar Schwar... gi\|194456900, gi... - gi\|194470536\|ref\|ZP_03076520.1\| DNA helicase II [Salmonella enterica subsp. enterica serovar Kentuck... gi\|194451500, gi... - gi\|194451500\|ref\|YP_002047963.1\| DNA-dependent helicase II [Salmonella enterica subsp. enterica sero... gi\|194444550, gi... - gi\|194444550\|ref\|YP_002043181.1\| DNA helicase II [Salmonella enterica subsp. enterica serovar Newpor... gi\|205340965, gi... - gi\|205340965\|gb\|EDZ27729.1\| DNA helicase II [Salmonella enterica subsp. enterica serovar Weltevreden... gi\|205348080, gi... - gi\|205348080\|gb\|EDZ34711.1\| DNA helicase II [Salmonella enterica subsp. enterica serovar Hadar str. ... gi\|205336527, gi... - gi\|205336527\|gb\|EDZ23291.1\| DNA helicase II [Salmonella enterica subsp. enterica serovar Heidelberg ... gi\|168238404, gi... - gi\|197288763\|gb\|EDY28138.1\| DNA helicase II [Salmonella enterica subsp. enterica serovar Schwarzengr... gi\|168233884, gi... - gi\|205332069\|gb\|EDZ18833.1\| DNA helicase II [Salmonella enterica subsp. enterica serovar Kentucky st... gi\|161366434, gi... - gi\|161617070\|ref\|YP_001591035.1\| DNA-dependent helicase II [Salmonella enterica subsp. enterica sero...	627.0	[0..1]	[720..1]

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Predicted Domain #1

Region A:
Residues: [1-722]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVSSLLDGL NDKQREAVAA PQSSMLVLAG AGSGKTRVLT HRIAWLMQVE QQSPYSILAV  60
   61 TFTNKAAAEM RERVEKVAGT NMGRMWIGTF HGLAHRLLRT HFQDAGLPQS FQILDSDDQL 120
  121 RLLKRILKSL NLDEKQYPPR QAQGYINGKK DQGLRPKHID AGGFPIEQNL LKIYQVYQES 180
  181 CDRAGLVDFA EILLRAHELW LNKPHLLAHY QERFKHILVD EFQDTNAIQY AWIRMLAGQT 240
  241 ANVMIVGDDD QSIYGWRGAQ VENLHRFLKD FPTATTIRLE QNYRSKGNIL KASNALIANN 300
  301 PERLGKELWT DEADGEPISL YCAFNEMDEA RFIVGRINDW YEKGGNLSDC AILYRSNAQS 360
  361 RVLEEALLHK GLAYRIYGGL RFFERQEIKD AMGYMRLISN KNDDAAFERV VNTPPRGIGD 420
  421 RTLDILRTTA RQQELTLWQA CLRLLDEKVL AGRAASAVRG FMDLIVTLQE DTQDMALYRM 480
  481 ADTVIQASGL KAMYEAEKGE KAHARIENLE ELVTAARTFE MPEELEDMGE LNAFLSHAAL 540
  541 EAGEGQADAF TDAVQLMTLH SAKGLEFTMV FMAGVEEGIF PSKMALEEGD RLDEERRLCY 600
  601 VGMTRAMEKL YITYAESRRI YGREDYARPS RFIKEIPPQY VDEIRLKAQV STPMANNRFS 660
  661 TQKSAVANDT GFSVGQRVHH PKFGDGKVTN FEGSGAQARV QVNFSDFGSK WLVVAYARLE 720
  721 AR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	162.0
Match:	2is1A
Description:	No description for 2is1A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits