YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372017, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	283 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372017, gi|....

Description	E-value	Query Range	Subject Range
gi\|77381874, gi\|... - gi\|77457871\|ref\|YP_347376.1\| cobalamin biosynthesis protein [Pseudomonas fluorescens Pf0-1], gi\|7738...	244.0	[0..17]	[274..18]
COBD_METJA - Probable cobalamin biosynthesis protein CobD OS=Methanocaldococcus jannaschii (strain ATCC 43067 / D... COBD_METJA - Probable cobalamin biosynthesis protein cobD OS=Methanocaldococcus jannaschii GN=cobD PE=3 SV=1	242.0	[0..1]	[282..2]
gi\|63257614, gi\|... - gi\|66046907\|ref\|YP_236748.1\| cobalamin biosynthesis protein [Pseudomonas syringae pv. syringae B728a...	241.0	[0..1]	[279..1]
gi\|28202879, gi\|... - gi\|28210442\|ref\|NP_781386.1\| cobalamin biosynthesis protein [Clostridium tetani E88], gi\|28202879\|gb...	241.0	[0..1]	[250..16]
gi\|68346073, gi\|... - gi\|70731774\|ref\|YP_261516.1\| cobalamin biosynthesis protein [Pseudomonas fluorescens Pf-5], gi\|68346...	241.0	[0..1]	[275..1]
gi\|28868917, gi\|... - gi\|28868917\|ref\|NP_791536.1\| cobalamin biosynthesis protein [Pseudomonas syringae pv. tomato str. DC... tr\|Q885X0\|Q885X0... - Cobalamin biosynthesis protein CobD OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=cobD PE=3 ...	240.0	[0..1]	[279..1]
gi\|71556125, gi\|... - gi\|71735572\|ref\|YP_275841.1\| cobalamin biosynthesis protein [Pseudomonas syringae pv. phaseolicola 1...	239.0	[0..1]	[279..1]
COBD_CLOTE - Cobalamin biosynthesis protein CobD OS=Clostridium tetani (strain Massachusetts / E88) GN=cobD PE=3 ... COBD_CLOTE - Cobalamin biosynthesis protein CobD OS=Clostridium tetani GN=cobD PE=3 SV=2	239.0	[0..1]	[250..1]
gi\|27887330, gi\|... - gi\|34762986\|ref\|ZP_00143963.1\| CbiB protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256], g...	237.0	[0..8]	[280..11]
gi\|110681960, gi... - gi\|110801459\|ref\|YP_698435.1\| cobalamin biosynthesis protein [Clostridium perfringens SM101], gi\|110...	236.0	[0..3]	[250..1]

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Predicted Domain #1

Region A:
Residues: [1-175]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALFSLLVAI LVERLKFLPA AWQCDRVLQS YQSTFFGDKA SLNNTNMLLA LILPAVVVYL  60
   61 LGWIVSDMFW GLLNLALWVL VAIICFNHQK QRDTFKKYMQ AACRSDVQAC YHYAAELDCS 120
  121 ECLNAVSEKD LGAKVGQSVA WINYRYYGAV ALLLIFLGPV GAALYCTARF YAEEN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [176-283]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IRKSLNLPLI EDIMFVLDWI PSRIFSFGYA LSGQFSEGLS AWRDNALNVH TSARQVVTAT  60
   61 ALASQPLPEV SSAPVCVQST LALLVLSKRN FTLMVAVLSL LTIFGLVS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.888	N/A	N/A	a.24.4	Hemerythrin

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits