YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372010, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	308 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372010, gi|....

Description	E-value	Query Range	Subject Range
gi\|145566200, gi... - gi\|77813929\|ref\|ZP_00813200.1\| Prepilin peptidase [Shewanella putrefaciens CN-32], gi\|77811174\|gb\|EA...	315.0	[0..1]	[308..1]
gi\|120597345, gi... - gi\|82744197\|ref\|ZP_00906784.1\| Prepilin peptidase [Shewanella sp. W3-18-1], gi\|82718452\|gb\|EAP53431....	315.0	[0..1]	[308..1]
gi\|78506146, gi\|... - gi\|78686182\|ref\|ZP_00850953.1\| Prepilin peptidase [Shewanella sp. ANA-3], gi\|78506146\|gb\|EAP19668.1\|...	314.0	[0..1]	[308..2]
gi\|68543123, gi\|... - gi\|68543123\|ref\|ZP_00582838.1\| Prepilin peptidase [Shewanella baltica OS155], gi\|68519167\|gb\|EAN4271...	314.0	[0..1]	[308..1]
gi\|113910144, gi... - gi\|160877166\|ref\|YP_001556482.1\| prepilin peptidase [Shewanella baltica OS195], gi\|160862688\|gb\|ABX5...	313.0	[0..1]	[308..1]
gi\|69163170, gi\|... - gi\|69953987\|ref\|ZP_00640869.1\| Prepilin peptidase [Shewanella frigidimarina NCIMB 400], gi\|69163170\|...	313.0	[0..1]	[308..1]
gi\|78690767, gi\|... - gi\|78690767\|ref\|ZP_00855406.1\| Prepilin peptidase [Shewanella sp. MR-7], gi\|78509823\|gb\|EAP23206.1\| ...	312.0	[0..1]	[308..1]
gi\|113968762, gi... - gi\|82497183\|ref\|ZP_00882741.1\| Prepilin peptidase [Shewanella sp. MR-4], gi\|82404772\|gb\|EAP45454.1\| ...	312.0	[0..1]	[308..1]
gi\|37680965, gi\|... - gi\|37680965\|ref\|NP_935574.1\| type IV prepilin-like proteins leader peptide processing enzyme [Vibrio...	297.0	[0..9]	[308..18]
gi\|46914732, gi\|... - gi\|54310291\|ref\|YP_131311.1\| putative leader peptidase PilD [Photobacterium profundum SS9], gi\|46914...	295.0	[0..9]	[306..1]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEFFTLLGH TFDQAPWLFI SLSFVFAATI GSFLNVVIHR FPVMMKREWQ QECNQYLQEY  60
   61 HADIVKQVGI DKLSKAIDHY PPKYNLVVPG SACPKCKTAI KPWHNLPMLG WLMLRGKCAA 120
  121 CSAPISARYP IIELITGLLV ATLAWHFGP

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.987
Match:	1gwsA
Description:	16-heme cytochrome c HmcA
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [150-308]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SWQFVFAAIL TFVLIALTGI DLDEMLLPDQ MTLPLLWLGL LINLNHTFTS PADAMIGAAA  60
   61 GYLSLWSIFW LFKLLTGKEG MGYGDFKLLA VFGAWLGWQM LPLVILLSSL VGAFVGITLI 120
  121 VTKRNQLANP IPFGPYIAAA GWIALIWGQP IVDWYLSTL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	21.244125
Match:	PF01478.9
Description:	No description for PF01478.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits