YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24345865, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	306 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24345865, gi|....

Description	E-value	Query Range	Subject Range
gi\|238783835, gi... - gi\|77958961\|ref\|ZP_00822986.1\| COG0248: Exopolyphosphatase [Yersinia bercovieri ATCC 43970], gi\|2387...	323.0	[0..6]	[305..15]
gi\|77960040, gi\|... - gi\|77960040\|ref\|ZP_00823939.1\| COG0248: Exopolyphosphatase [Yersinia mollaretii ATCC 43969], gi\|2387...	323.0	[0..6]	[305..15]
gi\|3452466 - gi\|3452466\|gb\|AAC32884.1\| exopolyphosphatase [Vibrio cholerae]	322.0	[0..3]	[306..8]
gi\|116188033, gi... - gi\|75829050\|ref\|ZP_00758370.1\| COG0248: Exopolyphosphatase [Vibrio cholerae MO10], gi\|116188033\|ref\|...	322.0	[0..3]	[306..8]
gi\|229338951, gi... - gi\|229525370\|ref\|ZP_04414775.1\| exopolyphosphatase [Vibrio cholerae bv. albensis VL426], gi\|22933895... gi\|229530145, gi... - gi\|229530145\|ref\|ZP_04419535.1\| exopolyphosphatase [Vibrio cholerae 12129(1)], gi\|229333919\|gb\|EEN99... gi\|229350030, gi... - gi\|229513137\|ref\|ZP_04402603.1\| exopolyphosphatase [Vibrio cholerae TMA 21], gi\|229350030\|gb\|EEO1498... gi\|229344503, gi... - gi\|229517788\|ref\|ZP_04407232.1\| exopolyphosphatase [Vibrio cholerae RC9], gi\|229344503\|gb\|EEO09477.1... gi\|9655165, gi\|1... - gi\|9655165\|gb\|AAF93887.1\| exopolyphosphatase [Vibrio cholerae O1 biovar El Tor str. N16961], gi\|1564... gi\|11266438 - gi\|11266438\|pir\|\|C82289 exopolyphosphatase VC0722 [imported] - Vibrio cholerae (strain N16961 serog... gi\|254285445, gi... - gi\|254285445\|ref\|ZP_04960409.1\| exopolyphosphatase [Vibrio cholerae AM-19226], gi\|197752882\|ref\|YP_0... gi\|148875126, gi... - gi\|153829406\|ref\|ZP_01982073.1\| exopolyphosphatase [Vibrio cholerae 623-39], gi\|148875126\|gb\|EDL7326... gi\|227080901, gi... - gi\|227080901\|ref\|YP_002809452.1\| exopolyphosphatase [Vibrio cholerae M66-2], gi\|227008789\|gb\|ACP0500... gi\|229505662, gi... - gi\|229505662\|ref\|ZP_04395172.1\| exopolyphosphatase [Vibrio cholerae BX 330286], gi\|229357885\|gb\|EEO2...	322.0	[0..3]	[306..31]
gi\|77629846, gi\|... - gi\|77629846\|ref\|ZP_00792432.1\| COG0248: Exopolyphosphatase [Yersinia pseudotuberculosis IP 31758], g... gi\|165937131, gi... - gi\|89104917\|ref\|ZP_01177447.1\| COG0248: Exopolyphosphatase [Yersinia pestis biovar Orientalis str. I... gi\|165926016, gi... - gi\|165926016\|ref\|ZP_02221848.1\| exopolyphosphatase [Yersinia pestis biovar Orientalis str. F1991016]... gi\|165992796, gi... - gi\|166008414\|ref\|ZP_02229312.1\| exopolyphosphatase [Yersinia pestis biovar Antiqua str. E1979001], g... gi\|166206438, gi... - gi\|166212507\|ref\|ZP_02238542.1\| exopolyphosphatase [Yersinia pestis biovar Antiqua str. B42003004], ... gi\|166960759, gi... - gi\|167421270\|ref\|ZP_02313023.1\| exopolyphosphatase [Yersinia pestis biovar Orientalis str. MG05-1020... gi\|229681652, gi... - gi\|229901723\|ref\|ZP_04516845.1\| exopolyphosphatase [Yersinia pestis Nepal516], gi\|229681652\|gb\|EEO77... gi\|167056354, gi... - gi\|167424472\|ref\|ZP_02316225.1\| exopolyphosphatase [Yersinia pestis biovar Mediaevalis str. K1973002... Q668D7\|Q668D7_YERPS - Putative exopolyphosphatase - Yersinia pseudotuberculosis gi\|167467165 - gi\|167467165\|ref\|ZP_02331869.1\| exopolyphosphatase [Yersinia pestis FV-1] gi\|149365300, gi... - gi\|149365300\|ref\|ZP_01887335.1\| exopolyphosphatase [Yersinia pestis CA88-4125], gi\|149291713\|gb\|EDM4... gi\|169750119, gi... - gi\|170023585\|ref\|YP_001720090.1\| exopolyphosphatase [Yersinia pseudotuberculosis YPIII], gi\|16975011... gi\|145599461, gi... - gi\|145599461\|ref\|YP_001163537.1\| exopolyphosphatase [Yersinia pestis Pestoides F], gi\|145211157\|gb\|A... gi\|186896210, gi... - gi\|186896210\|ref\|YP_001873322.1\| exopolyphosphatase [Yersinia pseudotuberculosis PB1/+], gi\|18669923... gi\|229694778, gi... - gi\|229838412\|ref\|ZP_04458571.1\| exopolyphosphatase [Yersinia pestis biovar Orientalis str. PEXU2], g... gi\|229701555, gi... - gi\|229895400\|ref\|ZP_04510572.1\| exopolyphosphatase [Yersinia pestis Pestoides A], gi\|229701555\|gb\|EE... gi\|25290375 - pir\|\|AF0345 probable exopolyphosphatase (EC 3.6.1.11) [imported] - Yersinia pestis (strain CO92) gi\|229898979, gi... - gi\|229898979\|ref\|ZP_04514123.1\| exopolyphosphatase [Yersinia pestis biovar Orientalis str. India 195... gi\|45437342, gi\|... - gi\|45442477\|ref\|NP_994016.1\| exopolyphosphatase [Yersinia pestis biovar Microtus str. 91001], gi\|454... gi\|22125295, gi\|... - gi\|22125295\|ref\|NP_668718.1\| exopolyphosphatase [Yersinia pestis KIM], gi\|21958171\|gb\|AAM84969.1\|AE0... gi\|218929900, gi... - gi\|218929900\|ref\|YP_002347775.1\| exopolyphosphatase [Yersinia pestis CO92], gi\|16123032\|ref\|NP_40634... gi\|51597119, gi\|... - gi\|51597119\|ref\|YP_071310.1\| exopolyphosphatase [Yersinia pseudotuberculosis IP 32953], gi\|51590401\|...	322.0	[0..6]	[305..14]
gi\|149738993, gi... - gi\|153827127\|ref\|ZP_01979794.1\| exopolyphosphatase [Vibrio cholerae MZO-2], gi\|149738993\|gb\|EDM53305... gi\|116216596, gi... - gi\|75823467\|ref\|ZP_00752966.1\| COG0248: Exopolyphosphatase [Vibrio cholerae RC385], gi\|116216596\|ref... gi\|121590893, gi... - gi\|121590893\|ref\|ZP_01678216.1\| exopolyphosphatase [Vibrio cholerae 2740-80], gi\|121547258\|gb\|EAX573... gi\|124114444, gi... - gi\|153216129\|ref\|ZP_01950284.1\| exopolyphosphatase [Vibrio cholerae 1587], gi\|124114444\|gb\|EAY33264.... gi\|153220741, gi... - gi\|153220741\|ref\|ZP_01951852.1\| exopolyphosphatase [Vibrio cholerae MAK 757], gi\|124120305\|gb\|EAY390... gi\|126510611, gi... - gi\|153818829\|ref\|ZP_01971496.1\| exopolyphosphatase [Vibrio cholerae NCTC 8457], gi\|126510611\|gb\|EAZ7... PPX_VIBCH - Exopolyphosphatase OS=Vibrio cholerae GN=ppx PE=3 SV=2 PPX_VIBCH - Exopolyphosphatase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=ppx P...	322.0	[0..3]	[306..8]
gi\|162352033, gi... - gi\|77636354\|ref\|ZP_00798429.1\| COG0248: Exopolyphosphatase [Yersinia pestis Angola], gi\|162419218\|re...	322.0	[0..6]	[305..14]
gi\|75815207 - gi\|75815207\|ref\|ZP_00745728.1\| COG0248: Exopolyphosphatase [Vibrio cholerae V52]	322.0	[0..3]	[306..8]
gi\|238723717, gi... - gi\|77974634\|ref\|ZP_00830173.1\| COG0248: Exopolyphosphatase [Yersinia frederiksenii ATCC 33641], gi\|2...	322.0	[0..6]	[305..15]

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Predicted Domain #1

Region A:
Residues: [1-306]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTPAYAAIT LGSNSFNMLI AKTKGDQPHI IAKYKRKVRL AEGIGEDGYL SQEVMQRGLD  60
   61 CLAMFAQMLT LHKIHPNHVA VIATATLRTI NNADEFNQKA IPLLGHPIEI ISGMREAELI 120
  121 YQGMVATTCG QGRRLVIDIG GASSEFIIGD GHQVQFKTSL PMGSVTFNRR FFSNAPVQEL 180
  181 DFDDAKQQVL EVLGEHRQRL KDLGWHCVVG ASGAVQSVVE ILMHRKLSEI ITLSVLTQLK 240
  241 AEILAEEDAS LSGIIGLSVE RAPTFAAGVA ILLALFELLG LEQLALSGGA LREGVLVMLA 300
  301 NRILES

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	86.221849
Match:	1u6zA
Description:	Structure of an E. coli Exopolyphosphatase: Insight into the processive hydrolysis of polyphosphate and its regulation
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.554867574854209	bayes_pls_golite062009
protein binding	0.298844891785753	bayes_pls_golite062009
kinase activity	0.2515032504266	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.15796485950406	bayes_pls_golite062009
catalytic activity	0.124320622497806	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.0956558597796202	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: