YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24345851, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	223 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24345851, gi|....

Description	E-value	Query Range	Subject Range
gi\|71847029, gi\|... - gi\|71907408\|ref\|YP_284995.1\| fumarate reductase cytochrome b-556 subunit [Dechloromonas aromatica RC...	200.0	[0..4]	[219..30]
gi\|220880604 - gi\|220880604\|emb\|CAP45369.1\| fumarate reductase cytochrome b subunit [Cloning vector pFrdcat2] FRDC_WOLSU - Fumarate reductase cytochrome b subunit OS=Wolinella succinogenes GN=frdC PE=1 SV=1 FRDC_WOLSU - Fumarate reductase cytochrome b subunit OS=Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / LM...	194.0	[0..7]	[219..19]
gi\|90704622 - gi\|90704622\|emb\|CAF31348.1\| fumarate reductase dihaem cytochrome B subunit [Campylobacter jejuni]	194.0	[0..2]	[219..12]
gi\|11252627 - pir\|\|F81384 fumarate reductase cytochrome B chain Cj0408 [imported] - Campylobacter jejuni (strain N... gi\|218562066, gi... - gi\|6967882\|emb\|CAB74244.1\| fumarate reductase cytochrome B subunit [Campylobacter jejuni subsp. jeju... gi\|57166267, gi\|... - gi\|57237463\|ref\|YP_178476.1\| fumarate reductase cytochrome b-556 subunit [Campylobacter jejuni RM122... gi\|157414703, gi... - gi\|157414703\|ref\|YP_001481959.1\| fumarate reductase cytochrome b-556 subunit [Campylobacter jejuni s... gi\|88597439, gi\|... - gi\|88597439\|ref\|ZP_01100674.1\| fumarate reductase, cytochrome b subunit [Campylobacter jejuni subsp.... gi\|121612270, gi... - gi\|87304737\|ref\|ZP_01086893.1\| Fumarate reductase respiratory complex, transmembrane subunit [Campyl... gi\|85842817, gi\|... - gi\|86153856\|ref\|ZP_01072059.1\| Fumarate reductase respiratory complex, transmembrane subunit [Campyl... gi\|85841810, gi\|... - gi\|86151463\|ref\|ZP_01069678.1\| fumarate reductase, cytochrome b subunit [Campylobacter jejuni subsp.... gi\|85840399, gi\|... - gi\|86149041\|ref\|ZP_01067273.1\| fumarate reductase, cytochrome b subunit [Campylobacter jejuni subsp....	193.0	[0..2]	[219..12]
gi\|157874498, gi... - gi\|157874498\|pdb\|1E7P\|L Chain L, Quinol:fumarate Reductase From Wolinella Succinogenes, gi\|157874496...	193.0	[0..7]	[219..19]
gi\|109691674 - gi\|109691674\|ref\|ZP_01378741.1\| hypothetical protein Cjejd_01000121 [Campylobacter jejuni subsp. doy...	191.0	[0..2]	[219..26]
gi\|2058518 - gi\|2058518\|gb\|AAC46063.1\| FrdC [Helicobacter pylori]	188.0	[0..12]	[219..24]
gi\|107836385, gi... - gi\|108562612\|ref\|YP_626928.1\| fumarate reductase cytochrome b-556 subunit [Helicobacter pylori HPAG1...	188.0	[0..12]	[219..24]
FRDC_HELPY - Fumarate reductase cytochrome b subunit OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=frdC ... FRDC_HELPY - Fumarate reductase cytochrome b subunit OS=Helicobacter pylori GN=frdC PE=3 SV=2	188.0	[0..12]	[219..24]

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Predicted Domain #1

Region A:
Residues: [1-223]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIKLSIKKW SAWLDLSQSV SGVILAVFLW THLVLVSSIL LGGDAMHWVA RTMELSFLSS  60
   61 DGRGFPWVVT CIAIGIAALA LVHVLVALQK LPMSLRQQRA LQQQMQVINH SDTRLWRWQV 120
  121 ITGVVILLLL PVHLWLIGSA PETIGPQGSA DRIWNQGVWM VYLPLLLTVE LHAAIGIYRV 180
  181 ALKWGAALDL NSRSRLRKIK TIVSVAFVTV GLASLLAFLP YAS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.30103
Match:	2bs2C
Description:	No description for 2bs2C was found.

Predicted functions:

Term	Confidence	Notes
succinate dehydrogenase activity	3.77307162030081	bayes_pls_golite062009
oxidoreductase activity	2.006262138179	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors	1.40315688445419	bayes_pls_golite062009
electron carrier activity	1.35460962236208	bayes_pls_golite062009
catalytic activity	1.34226547326392	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: