YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24371992, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	241 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24371992, gi|....

Description	E-value	Query Range	Subject Range
gi\|220880604 - gi\|220880604\|emb\|CAP45369.1\| fumarate reductase cytochrome b subunit [Cloning vector pFrdcat2] FRDC_WOLSU - Fumarate reductase cytochrome b subunit OS=Wolinella succinogenes GN=frdC PE=1 SV=1 FRDC_WOLSU - Fumarate reductase cytochrome b subunit OS=Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / LM...	223.0	[0..3]	[238..5]
gi\|157874498, gi... - gi\|157874498\|pdb\|1E7P\|L Chain L, Quinol:fumarate Reductase From Wolinella Succinogenes, gi\|157874496...	221.0	[0..3]	[238..5]
gi\|11252627 - pir\|\|F81384 fumarate reductase cytochrome B chain Cj0408 [imported] - Campylobacter jejuni (strain N... gi\|218562066, gi... - gi\|6967882\|emb\|CAB74244.1\| fumarate reductase cytochrome B subunit [Campylobacter jejuni subsp. jeju... gi\|57166267, gi\|... - gi\|57237463\|ref\|YP_178476.1\| fumarate reductase cytochrome b-556 subunit [Campylobacter jejuni RM122... gi\|157414703, gi... - gi\|157414703\|ref\|YP_001481959.1\| fumarate reductase cytochrome b-556 subunit [Campylobacter jejuni s... gi\|88597439, gi\|... - gi\|88597439\|ref\|ZP_01100674.1\| fumarate reductase, cytochrome b subunit [Campylobacter jejuni subsp.... gi\|121612270, gi... - gi\|87304737\|ref\|ZP_01086893.1\| Fumarate reductase respiratory complex, transmembrane subunit [Campyl... gi\|85842817, gi\|... - gi\|86153856\|ref\|ZP_01072059.1\| Fumarate reductase respiratory complex, transmembrane subunit [Campyl... gi\|85841810, gi\|... - gi\|86151463\|ref\|ZP_01069678.1\| fumarate reductase, cytochrome b subunit [Campylobacter jejuni subsp.... gi\|85840399, gi\|... - gi\|86149041\|ref\|ZP_01067273.1\| fumarate reductase, cytochrome b subunit [Campylobacter jejuni subsp....	218.0	[0..1]	[230..1]
gi\|90704622 - gi\|90704622\|emb\|CAF31348.1\| fumarate reductase dihaem cytochrome B subunit [Campylobacter jejuni]	217.0	[0..1]	[230..1]
gi\|109691674 - gi\|109691674\|ref\|ZP_01378741.1\| hypothetical protein Cjejd_01000121 [Campylobacter jejuni subsp. doy...	215.0	[0..1]	[230..15]
gi\|114049110, gi... - gi\|78690783\|ref\|ZP_00855422.1\| fumarate reductase cytochrome B subunit [Shewanella sp. MR-7], gi\|785...	214.0	[0..1]	[241..1]
gi\|7431709 - pir\|\|H71963 fumarate reductase - Helicobacter pylori (strain J99) FRDC_HELPJ - Fumarate reductase cytochrome b subunit OS=Helicobacter pylori (strain J99 / ATCC 700824) GN=frdC PE...	213.0	[0..3]	[230..5]
gi\|78686166, gi\|... - gi\|78686166\|ref\|ZP_00850937.1\| fumarate reductase cytochrome B subunit [Shewanella sp. ANA-3], gi\|78... gi\|113883430, gi... - gi\|82497199\|ref\|ZP_00882757.1\| fumarate reductase cytochrome B subunit [Shewanella sp. MR-4], gi\|824...	213.0	[0..1]	[241..1]
gi\|109946986, gi... - gi\|109946986\|ref\|YP_664214.1\| fumarate reductase cytochrome b-556 subunit [Helicobacter acinonychis ...	213.0	[0..3]	[230..5]

Back

Predicted Domain #1

Region A:
Residues: [1-241]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISVTRVHTR VKTQGIGHPW SAKADRLQSA TGIMLGCFLL LHMHFESSIL LGKEAFYQVV  60
   61 QLLEGGMFSS TGHGFPMVTK VFSVFMLLVV ILHAAVALRR FPAQLGQWRA LRSHLGCINH 120
  121 RDTHAWFWQL ITGFILFFLV PVHLFTMILN PEIGPHLSAE RVYHDNAWLL YALLLPAVVI 180
  181 HAMIGLYRVA VKWGITAQRS GLRKLAKVLI IYLLCLGSAS LVAYMLIGSE LSIPVQPYVP 240
  241 Q

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.0
Match:	2bs2C
Description:	No description for 2bs2C was found.

Predicted functions:

Term	Confidence	Notes
succinate dehydrogenase activity	10.6133558935785	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors	7.24661342841192	bayes_pls_golite062009
oxidoreductase activity	5.99989196344185	bayes_pls_golite062009
electron carrier activity	4.50772505551128	bayes_pls_golite062009
catalytic activity	0.971825536251904	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: