YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24345796, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	554 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24345796, gi|....

Description	E-value	Query Range	Subject Range
gi\|75701558, gi\|... - gi\|75907833\|ref\|YP_322129.1\| amino acid adenylation [Anabaena variabilis ATCC 29413], gi\|75701558\|gb...	423.0	[0..2]	[553..539]
gi\|56419203, gi\|... - gi\|56419203\|ref\|YP_146521.1\| acyl-CoA synthetase [Geobacillus kaustophilus HTA426], gi\|56379045\|dbj\|...	416.0	[0..7]	[534..2]
gi\|77996178, gi\|... - gi\|78044063\|ref\|YP_360551.1\| long-chain-fatty-acid--CoA ligase [Carboxydothermus hydrogenoformans Z-...	415.0	[0..1]	[535..22]
gi\|186682529, gi... - gi\|23129063\|ref\|ZP_00110897.1\| COG1020: Non-ribosomal peptide synthetase modules and related protein...	410.0	[0..2]	[553..1564]
gi\|27817222 - gi\|27817222\|gb\|AAO23333.1\| NcpA [Nostoc sp. ATCC 53789]	407.0	[0..2]	[553..2661]
gi\|68541175, gi\|... - gi\|68541175\|ref\|ZP_00580921.1\| AMP-dependent synthetase and ligase [Shewanella baltica OS155], gi\|68...	407.0	[0..1]	[554..1]
gi\|160873481, gi... - gi\|160873481\|ref\|YP_001552797.1\| AMP-dependent synthetase and ligase [Shewanella baltica OS195], gi\|...	406.0	[0..1]	[554..1]
ACSA_SYNFM - Acetyl-coenzyme A synthetase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=acsA PE=3 ...	404.0	[0..2]	[553..70]

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Predicted Domain #1

Region A:
Residues: [1-554]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKAIKTPIE MLAHWANTRG DEIYLRQPIK GQYLDFTWNE VQEKVQQLAG ALRHLGLEPG  60
   61 DKIAVLSKNC AEWFITDLAL MHGGYISVPI YPTANPDTIR YVLQHSGAKA IFLGKLDHWA 120
  121 DQEAGVGGEL LRLAMPYDTM PAQYQWEQLL NMGNPLIEAP LPEPDQIMTL IYTSGSTGQP 180
  181 KGAIQTFASY GWTCQAVVRD LRTNGNDRLL SYLPLAHITE RVAIEGSSFY SGSVVAFVES 240
  241 LDSFVADVQR AKPTVFFSVP RLWSLFQKNI IDKIGVSKLN LLLKIPLISS LVKHKIHKGL 300
  301 GLNHCRLLGS GSAPIPPSLI HWYHSIGLNI CEAWGMTENC AYSIINYPFD VRKIGTVGKP 360
  361 VQDCQIRQGE DGELLIKSPG LMTAYYLQPE ATAAAFDADG FFHTGDLCAI DADGCVTITG 420
  421 RVKDNFKTAK GKYVAPVPIE RKLAQDPHVE LICVIGSGLP HPVALVQLSE GANLQAREEV 480
  481 RASLKATLDS VNPHLESHEH VDAIVVVNEP WSIENDVLTP TLKIKRHVLE KAFSERVDGI 540
  541 RGAQVRWEDE LAKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	112.0
Match:	2p2bA
Description:	No description for 2p2bA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits