YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24371952, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	316 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24371952, gi|....

Description	E-value	Query Range	Subject Range
gi\|46136511, gi\|... - gi\|46136511\|ref\|XP_389947.1\| hypothetical protein FG09771.1 [Gibberella zeae PH-1], gi\|42553297\|gb\|E...	226.0	[0..4]	[305..203]
gi\|25405998, gi\|... - gi\|8778496\|gb\|AAF79504.1\|AC002328_12 F20N2.14 [Arabidopsis thaliana], pir\|\|C96599 protein F20N2.14 [...	186.0	[0..5]	[283..805]
gi\|49108966, gi\|... - gi\|67901046\|ref\|XP_680779.1\| hypothetical protein AN7510.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	184.0	[0..4]	[308..188]
gi\|111057198 - gi\|111057198\|gb\|EAT78318.1\| hypothetical protein SNOG_14447 [Phaeosphaeria nodorum SN15]	181.0	[0..5]	[308..318]
gi\|1652037, gi\|1... - gi\|1652037\|dbj\|BAA16962.1\| slr0681 [Synechocystis sp. PCC 6803], gi\|16329554\|ref\|NP_440282.1\| hypoth... gi\|7470257 - pir\|\|S74922 hypothetical protein slr0681 - Synechocystis sp. (strain PCC 6803)	174.0	[0..2]	[312..70]
gi\|86168561, gi\|... - gi\|87123992\|ref\|ZP_01079842.1\| putative CaCA family, sodium/calcium exchanger [Synechococcus sp. RS9...	172.0	[0..1]	[315..5]
gi\|67922821, gi\|... - gi\|67922821\|ref\|ZP_00516320.1\| K+-dependent Na+/Ca+ exchanger related-protein [Crocosphaera watsonii...	171.0	[0..1]	[311..4]

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Predicted Domain #1

Region A:
Residues: [1-150]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLIALSIIGG FLILTLGAEA LVRGATTIAL RLGITPLVIG LTIVAFGTSA PELAVSVKAA  60
   61 LAGNSGIALG NVIGSNIVNI GLILGITALI RPIEVKSEMV KRDIPIMILA SMLFWGLLLD 120
  121 GELSLIDGVI LLSFMLGYLV FSYFSAKNTN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	43.327902
Match:	PF01699.15
Description:	No description for PF01699.15 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [151-316]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DADGEVIEEG PKNPLLSLLF IAVGISMLVG GGILFVNGAV DLAKVFGVSE IIIGLTIVAI  60
   61 GTSMPELVTS VLAALKGQSD IAIGNIVGSN IFNILGILGV TAIVYPVSGL GFQSLDFIVM 120
  121 LAFAVVILPF AWTGLRIGRR EGATLLIAYL GYLIYLVNQA STQAVV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	38.39794
Match:	PF01699.15
Description:	No description for PF01699.15 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits