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View Structure Prediction Details

Protein: gi|24345793, gi|...
Organism: Shewanella oneidensis MR-1
Length: 359 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24345793, gi|....

Description E-value Query
Range
Subject
Range
gi|29341374, gi|... - gi|29349465|ref|NP_812968.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomic...
209.0 [0..131] [356..663]
gi|42524006, gi|... - gi|42524006|ref|NP_969386.1| two-component hybrid histidine kinase [Bdellovibrio bacteriovorus HD100...
203.0 [0..126] [358..338]
gi|71908921, gi|... - gi|71908921|ref|YP_286508.1| sensor histidine kinase [Dechloromonas aromatica RCB], gi|71848542|gb|A...
202.0 [0..91] [355..529]
gi|60491770, gi|... - gi|60680336|ref|YP_210480.1| putative two-component system sensor histidine kinase [Bacteroides frag...
202.0 [0..128] [355..655]
gi|82748806, gi|... - gi|82748806|ref|ZP_00911282.1| PAS [Clostridium beijerincki NCIMB 8052], gi|82723311|gb|EAP58084.1| ...
201.0 [0..118] [356..277]
gi|20907888, gi|... - gi|21229307|ref|NP_635229.1| two component system histidine kinase [Methanosarcina mazei Go1], gi|20...
201.0 [0..132] [356..310]
gi|68186676, gi|... - gi|91772668|ref|YP_565360.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcoides b...
199.0 [0..132] [355..190]

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Predicted Domain #1
Region A:
Residues: [1-118]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNTPLQLEQ KLAWVYLINL VFYLIPLFIT PYSSWQIILI LAVLVPFIYC YFWTYRCNFR  60
   61 SAYRPIIAML VLATVVTPIN PGSISLFTFA SFFIGFFYPI RVSVFCWFGV VVLLFLLN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [119-359]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YLNQFNNLYF PLYGTLLVLG VGMLGVAERR RYHHKLKEQQ SAQEISTLAT MVERERIARD  60
   61 LHDIMGHSLS SIALKAELAE KLLAKQEYQL ATTQLQELGQ IARESLSQIR HTVCDYKHKG 120
  121 LASCITQLCH SLRDKGIYVE LIGELPKLPA RAESQLGLIL TELVNNILRH SSASQCSITF 180
  181 REQENTLFVE VKDNASASPF IEGNGLTGIR ERLDSLGGHF SYNLEQGYAF TVSLPLQGAT 240
  241 V

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 39.69897
Match: 2c2aA
Description: Structure of the entire cytoplasmic portion of a sensor histidine kinase protein
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle