YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24371938, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	363 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24371938, gi|....

Description	E-value	Query Range	Subject Range
ILVE1_BACSU - Branched-chain-amino-acid transaminase 1 OS=Bacillus subtilis (strain 168) GN=ilvE PE=1 SV=1 gi\|221317308 - gi\|221317308\|ref\|ZP_03598602.1\| branched-chain amino acid aminotransferase [Bacillus subtilis subsp.... gi\|221321572 - gi\|221321572\|ref\|ZP_03602866.1\| branched-chain amino acid aminotransferase [Bacillus subtilis subsp.... YBGE_BACSU, ILVE... - Putative branched-chain-amino-acid aminotransferase OS=Bacillus subtilis GN=ybgE PE=3 SV=1, Branched... gi\|221312375 - gi\|221312375\|ref\|ZP_03594180.1\| branched-chain amino acid aminotransferase [Bacillus subtilis subsp....	399.0	[0..16]	[358..14]
ILVE_STAEQ - Probable branched-chain-amino-acid aminotransferase OS=Staphylococcus epidermidis (strain ATCC 35984...	398.0	[0..3]	[358..1]
gi\|251809972, gi... - gi\|251809972\|ref\|ZP_04824445.1\| amino acid aminotransferase [Staphylococcus epidermidis BCM-HMP0060]... ILVE_STAEP - (Q8CQ78) Probable branched-chain-amino-acid aminotransferase (EC 2.6.1.42) (BCAT) ILVE_STAES - Probable branched-chain-amino-acid aminotransferase OS=Staphylococcus epidermidis (strain ATCC 12228...	398.0	[0..3]	[358..1]
gi\|16507099 - gi\|16507099\|gb\|AAL24043.1\| transaminase B [Corynebacterium glutamicum] gi\|41326382, gi\|... - gi\|62391043\|ref\|YP_226445.1\| branched-chain amino acid aminotransferase [Corynebacterium glutamicum ...	394.0	[0..1]	[358..16]
gi\|67916441, gi\|... - gi\|67916441\|ref\|ZP_00510151.1\| Branched-chain amino acid aminotransferase II [Clostridium thermocell... gi\|196253717, gi... - gi\|196253717\|ref\|ZP_03152331.1\| branched-chain amino acid aminotransferase [Clostridium thermocellum...	394.0	[0..3]	[359..1]
gi\|10798674 - gi\|10798674\|emb\|CAC12788.1\| branched-chain amino acid aminotransferase [Staphylococcus carnosus] gi\|222420314, gi... - gi\|224475707\|ref\|YP_002633313.1\| branched-chain amino acid aminotroansferase [Staphylococcus carnosu...	394.0	[0..3]	[360..1]
ILVE_STAAR - Probable branched-chain-amino-acid aminotransferase OS=Staphylococcus aureus (strain MRSA252) GN=ilv... gi\|227852218, gi... - gi\|227899455\|ref\|ZP_04017260.1\| branched-chain amino acid aminotransferase [Staphylococcus aureus su... gi\|227557397, gi... - gi\|227557397\|ref\|ZP_03987444.1\| branched-chain amino acid aminotransferase [Staphylococcus aureus su...	391.0	[0..3]	[358..1]
gi\|82655793, gi\|... - gi\|82750262\|ref\|YP_416003.1\| branched-chain amino acid aminotransferase [Staphylococcus aureus RF122...	391.0	[0..3]	[358..1]
gi\|156978883, gi... - gi\|156978883\|ref\|YP_001441142.1\| branched-chain amino acid aminotransferase [Staphylococcus aureus s... gi\|151220728, gi... - gi\|151220728\|ref\|YP_001331550.1\| branched-chain amino acid aminotransferase [Staphylococcus aureus s... ILVE_STAAW - Probable branched-chain-amino-acid aminotransferase OS=Staphylococcus aureus (strain MW2) GN=ilvE PE... ILVE_STAAC - Probable branched-chain-amino-acid aminotransferase OS=Staphylococcus aureus (strain COL) GN=ilvE PE... gi\|87201874, gi\|... - gi\|88194316\|ref\|YP_499108.1\| branched-chain amino acid aminotransferase [Staphylococcus aureus subsp... gi\|87127518, gi\|... - gi\|87161544\|ref\|YP_493242.1\| branched-chain amino acid aminotransferase [Staphylococcus aureus subsp... gi\|87127518\|gb\|A... - branched-chain amino acid aminotransferase [Staphylococcus aureus subsp. aureus USA300], branched-ch... ILVE_STAAM - Probable branched-chain-amino-acid aminotransferase OS=Staphylococcus aureus (strain Mu50 / ATCC 700... gi\|90582720, gi\|... - gi\|90582720\|ref\|ZP_01238483.1\| Branched-chain amino acid aminotransferase II [Staphylococcus aureus ... ILVE_STAAN - Probable branched-chain-amino-acid aminotransferase OS=Staphylococcus aureus (strain N315) GN=ilvE P... gi\|90585432, gi\|... - gi\|90585432\|ref\|ZP_01241142.1\| Branched-chain amino acid aminotransferase II [Staphylococcus aureus ... gi\|251813503, gi... - gi\|251813503\|ref\|ZP_04827976.1\| branched-chain amino acid aminotransferase [Staphylococcus aureus su... gi\|253315664 - gi\|253315664\|ref\|ZP_04838877.1\| branched-chain amino acid aminotransferase [Staphylococcus aureus su... gi\|253732562, gi... - gi\|253732562\|ref\|ZP_04866727.1\| branched-chain amino acid aminotransferase [Staphylococcus aureus su... gi\|255005348 - gi\|255005348\|ref\|ZP_05143949.2\| branched-chain amino acid aminotransferase [Staphylococcus aureus su... gi\|269202177\|ref... - branched-chain amino acid aminotransferase [Staphylococcus aureus subsp. aureus ED98] gi\|25327776 - pir\|\|D89823 hypothetical protein ilvE [imported] - Staphylococcus aureus (strain N315) ILVE_STAAS - Probable branched-chain-amino-acid aminotransferase OS=Staphylococcus aureus (strain MSSA476) GN=ilv... gi\|221141008 - gi\|221141008\|ref\|ZP_03565501.1\| branched-chain amino acid aminotransferase [Staphylococcus aureus su... gi\|160367602, gi... - gi\|161508793\|ref\|YP_001574452.1\| branched-chain amino acid aminotransferase [Staphylococcus aureus s...	390.0	[0..3]	[358..1]

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Predicted Domain #1

Region A:
Residues: [1-363]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIKYDLKPA SERRTEQFKP EGNVGFGSLR TDHMFLMDYH DGEWRDPRIV PYGPFEMAPG  60
   61 AMALHYGQSI FEGAKAFMHE DGEIYTFRIN KNAERMNRSA DIVCIPNIDE QMQIDAINAL 120
  121 IDVDRLWFPM QEGACLYIRP FIFATEDRLS VSPSSRYTFC VVLSPSGAYY AAGVNKGIRL 180
  181 LISKTYHRAV SGGTGASKAA GNYAASLRAG KAAAQFGASQ VLYLDANNQQ IEEAGAMNHF 240
  241 HILKDGTVII PTFTDTILKS ITSQSIMELS ELLGCEVRQE TVMLDKFIAD IESGEIIEAG 300
  301 GFGTAAVVSA VGSYIFEDGR VVTVGNGEVG EHIQRIYKLY TDIQKGHVQG PEGWVKRVER 360
  361 VAP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	102.0
Match:	2cogA
Description:	Crystal structure of oxidized human cytosolic branched-chain aminotransferase complexed with 4-methylvalerate
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits