YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24371911, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	439 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24371911, gi|....

Description	E-value	Query Range	Subject Range
gi\|68373624 - gi\|68373624\|ref\|XP_692242.1\| PREDICTED: similar to Cationic amino acid transporter 3 (CAT-3) (Solute...	284.0	[0..2]	[381..971]
gi\|39943728, gi\|... - gi\|39943728\|ref\|XP_361401.1\| hypothetical protein MG03875.4 [Magnaporthe grisea 70-15], gb\|EAA50116....	258.0	[0..3]	[436..40]
gi\|42547995, gi\|... - gi\|46115914\|ref\|XP_383975.1\| hypothetical protein FG03799.1 [Gibberella zeae PH-1], gi\|42547995\|gb\|E...	256.0	[0..2]	[413..113]
gi\|91084137 - gi\|91084137\|ref\|XP_969912.1\| PREDICTED: similar to CG8475-PA, isoform A [Tribolium castaneum]	254.0	[0..3]	[376..2476]
gi\|116181860, gi... - gi\|88185855\|gb\|EAQ93323.1\| hypothetical protein CHGG_01558 [Chaetomium globosum CBS 148.51], gi\|1161...	251.0	[0..4]	[414..109]
YI26_SCHPO - Uncharacterized amino-acid permease P7G5.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) G... SPAP7G5.06 - amino acid permease, unknown 4	249.0	[0..4]	[434..80]
gi\|238482071, gi... - gi\|238482071\|ref\|XP_002372274.1\| amino acid permease (Gap1), putative [Aspergillus flavus NRRL3357],... gi\|169765514 - gi\|169765514\|ref\|XP_001817228.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83765083 - gi\|83765083\|dbj\|BAE55226.1\| unnamed protein product [Aspergillus oryzae]	248.0	[0..2]	[417..76]
orf19.3195 - HIP1 CGDID:CAL0002448 Assembly 19, Contig19-10170 (67622, 69421) CDS, translated using codon table 1... gi\|46436194, gi\|... - gi\|68482961\|ref\|XP_714611.1\| potential general amino acid permease [Candida albicans SC5314], gi\|464...	248.0	[0..3]	[437..88]
gi\|85095443 - gi\|85095443\|ref\|XP_960090.1\| general amino-acid permease GAP1 [Neurospora crassa OR74A] gi\|32410409, gi\|... - gi\|32410409\|ref\|XP_325685.1\| hypothetical protein [Neurospora crassa], gi\|28921549\|gb\|EAA30854.1\| ge...	248.0	[0..4]	[410..145]

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Predicted Domain #1

Region A:
Residues: [1-439]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKSENKIGV VQLTIITIVN MMGSGIIMLP TQLAQVGTIS VLSWLVTAAG STALAFAFAK  60
   61 CGMFSKKSGG MGGYAEYAFG RSGNFMANYT YAVSLLIANV AIAISAVGYA AVLLEVNLSP 120
  121 MAICLATIGV LWLATVANFG GARITGRVSS VTVWGIILPV IGVSLIGWFW FDIDLYKGAW 180
  181 NPHDMPFFKA LGGSIAMTLW AFLGLESACA NSEAVDNPEK NVPIAVMGGT LGAALIYIVS 240
  241 TNVIAGIVPN AELASSNAPF GLAFAQMFNP VVGKIVMACA IISCTGSLLG WQFTIAQVFK 300
  301 ASADEGFFPK VFAKVSKADA PIWGMTIIVS IQTLLSLMTI SPSLSKQFEA LVNLAVVTNI 360
  361 VPYILSMAAL GVMQKQLKVP ANKARVANVI AVIGALYSFY ALYSSGETAV MLGAIATFFG 420
  421 WTIYGVISNK TPSVEIKAA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.03
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits