YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24345717, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	227 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24345717, gi|....

Description	E-value	Query Range	Subject Range
gi\|229811380, gi... - gi\|229845694\|ref\|ZP_04465817.1\| phosphoglycolate phosphatase [Haemophilus influenzae 6P18H1], gi\|229... gi\|144985848, gi... - gi\|145633479\|ref\|ZP_01789208.1\| phosphoglycolate phosphatase [Haemophilus influenzae 3655], gi\|14498... GPH_HAEI8 - Phosphoglycolate phosphatase OS=Haemophilus influenzae (strain 86-028NP) GN=NTHI0697 PE=3 SV=1	187.0	[0..1]	[221..1]
gi\|145272121, gi... - gi\|145638526\|ref\|ZP_01794135.1\| phosphoglycolate phosphatase [Haemophilus influenzae PittII], gi\|145... gi\|53733330 - gi\|53733330\|ref\|ZP_00156383.2\| COG0546: Predicted phosphatases [Haemophilus influenzae R2866]	185.0	[0..1]	[221..1]
GPH_HAEIN - Phosphoglycolate phosphatase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) G... GPH_HAEIN - Phosphoglycolate phosphatase OS=Haemophilus influenzae GN=gph PE=3 SV=1	185.0	[0..1]	[221..1]
gi\|32034240 - gi\|32034240\|ref\|ZP_00134451.1\| COG0546: Predicted phosphatases [Actinobacillus pleuropneumoniae sero... gi\|126098145, gi... - gi\|126209353\|ref\|YP_001054578.1\| phosphoglycolate phosphatase [Actinobacillus pleuropneumoniae L20],...	184.0	[0..1]	[222..1]
gi\|42630012 - gi\|42630012\|ref\|ZP_00155557.1\| COG0546: Predicted phosphatases [Haemophilus influenzae R2846]	180.0	[0..1]	[221..1]
GPH_PASMU - Phosphoglycolate phosphatase OS=Pasteurella multocida (strain Pm70) GN=gph PE=3 SV=1 GPH_PASMU - Phosphoglycolate phosphatase OS=Pasteurella multocida GN=gph PE=3 SV=1	180.0	[0..1]	[222..1]
GPH_MANSM - Phosphoglycolate phosphatase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=MS2331 PE=3 SV=1	180.0	[0..1]	[221..1]
gi\|88795676, gi\|... - gi\|88795676\|ref\|ZP_01111369.1\| phosphoglycolate phosphatase [Alteromonas macleodii 'Deep ecotype'], ...	177.0	[0..1]	[220..1]
GPH_VIBPA - Phosphoglycolate phosphatase OS=Vibrio parahaemolyticus GN=gph PE=3 SV=1 GPH_VIBPA - Phosphoglycolate phosphatase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=gph ...	177.0	[0..1]	[224..1]
gi\|121998862, gi... - gi\|88949785\|ref\|ZP_01152400.1\| 2-phosphoglycolate phosphatase, prokaryotic:HAD-superfamily hydrolase...	177.0	[0..6]	[224..7]

Back

Predicted Domain #1

Region A:
Residues: [1-227]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRAQIKAIAF DLDGTLIDSV PDLAVATQAA LAELGLATCT EAQVRTWVGN GAEMLMRRAM  60
   61 SHALGADVEQ TALDAAMPIF MHHYQENLEK HSALYADVHQ VLQTLFDAGF KLAVVTNKPY 120
  121 RFTLPLLEAF KINDFFSLVL GGDSLAKMKP DPLPLEHLLA QWQLDKSELL MVGDSKNDIL 180
  181 AAKAAGVASI GLTYGYNYGE DIGLTGPDAV CEQFAEILSW LNVGQAV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.221849
Match:	2hszA
Description:	No description for 2hszA was found.

Predicted functions:

Term	Confidence	Notes
phosphatase activity	4.95181073884363	bayes_pls_golite062009
phosphoric ester hydrolase activity	4.77239634899576	bayes_pls_golite062009
hydrolase activity	4.28050357117094	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	4.03655952210286	bayes_pls_golite062009
phosphoprotein phosphatase activity	2.04527248780903	bayes_pls_golite062009
catalytic activity	1.92340854382984	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: