YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24345713, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	279 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24345713, gi|....

Description	E-value	Query Range	Subject Range
gi\|160877301, gi... - gi\|160877301\|ref\|YP_001556617.1\| DNA adenine methylase [Shewanella baltica OS195], gi\|160862823\|gb\|A...	347.0	[0..1]	[279..1]
gi\|28807752, gi\|... - gi\|28899516\|ref\|NP_799121.1\| DNA adenine methylase [Vibrio parahaemolyticus RIMD 2210633], gi\|288077... gi\|28807752 - gi\|28807752\|dbj\|BAC61005.1\| DNA adenine methylase [Vibrio parahaemolyticus RIMD 2210633]	347.0	[0..2]	[279..1]
gi\|54307504, gi\|... - gi\|54307504\|ref\|YP_128524.1\| putative DNA adenine methylase [Photobacterium profundum SS9], gi\|46911...	345.0	[0..2]	[271..1]
gi\|254230405, gi... - gi\|75853725\|ref\|ZP_00761500.1\| COG0338: Site-specific DNA methylase [Vibrio sp. Ex25], gi\|254230405\|...	344.0	[0..2]	[270..1]
gi\|27364779, gi\|... - gi\|27364779\|ref\|NP_760307.1\| site-specific DNA methylase [Vibrio vulnificus CMCP6], gi\|27360924\|gb\|A...	344.0	[0..2]	[270..1]
gi\|90413591, gi\|... - gi\|90413591\|ref\|ZP_01221581.1\| putative DNA adenine methylase [Photobacterium profundum 3TCK], gi\|90...	343.0	[0..2]	[271..1]
gi\|37199921, gi\|... - gi\|37681170\|ref\|NP_935779.1\| site-specific DNA methylase [Vibrio vulnificus YJ016], gi\|37199921\|dbj\|...	343.0	[0..2]	[270..1]
gi\|84390815, gi\|... - gi\|84390815\|ref\|ZP_00991507.1\| site-specific DNA methylase [Vibrio splendidus 12B01], gi\|84376618\|gb...	342.0	[0..2]	[277..1]
gi\|113972022, gi... - gi\|82497267\|ref\|ZP_00882824.1\| DNA adenine methylase [Shewanella sp. MR-4], gi\|82404736\|gb\|EAP45419....	342.0	[0..1]	[279..1]
gi\|78506336, gi\|... - gi\|78685838\|ref\|ZP_00850612.1\| DNA adenine methylase [Shewanella sp. ANA-3], gi\|78506336\|gb\|EAP19855...	342.0	[0..1]	[279..1]

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Predicted Domain #1

Region A:
Residues: [1-279]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKKHRAFLK WAGGKFKLVD ELANYLPTGE RLVEPFVGAG SVFLNTDYPR YLLCDINQDL  60
   61 INLYNIVKER PVEYIAAAKK LFVDEMNQKE AYYRVRTDFN KSNDPFLRSV YFLYLNRHGF 120
  121 NGLCRYNRKG GFNVPFGSYK KPYFPEKEIL AFSKKAQRAE FKCISYEKAF EQIRAGDVIY 180
  181 CDPPYAPLST TASFTTYVGA GFSLDDQALL ARYSRHMALE QRIPVVISNH DIPLTRELYR 240
  241 GAHLAKIQVQ RNISQNGSGR NKVDELIALY DETYDPQDD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	94.69897
Match:	2oreD
Description:	No description for 2oreD was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits