YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24345705, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	171 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24345705, gi|....

Description	E-value	Query Range	Subject Range
gi\|125999505, gi... - gi\|68540924\|ref\|ZP_00580672.1\| Pilus assembly protein, PilQ [Shewanella baltica OS155], gi\|68521309\|...	230.0	[0..1]	[171..1]
gi\|153002585, gi... - gi\|153002585\|ref\|YP_001368266.1\| pilus assembly protein PilP [Shewanella baltica OS185], gi\|15136720... gi\|113947568, gi... - gi\|160877306\|ref\|YP_001556622.1\| pilus assembly protein PilP [Shewanella baltica OS195], gi\|16086282...	228.0	[0..1]	[171..1]
gi\|126170183, gi... - gi\|254238252\|ref\|ZP_04931575.1\| type 4 fimbrial biogenesis protein PilP [Pseudomonas aeruginosa C371... gi\|116053189, gi... - gi\|116053189\|ref\|YP_793510.1\| type 4 fimbrial biogenesis protein PilP [Pseudomonas aeruginosa UCBPP-...	225.0	[0..1]	[168..1]
gi\|63254380, gi\|... - gi\|66043673\|ref\|YP_233514.1\| pilus assembly protein, PilQ [Pseudomonas syringae pv. syringae B728a],...	224.0	[0..1]	[168..1]
gi\|94415412 - gi\|94415412\|ref\|ZP_01295253.1\| hypothetical protein PaerP_01002780 [Pseudomonas aeruginosa PA7]	223.0	[0..8]	[168..4]
gi\|124548504, gi... - gi\|124548504\|ref\|ZP_01707145.1\| Pilus assembly protein, PilQ [Shewanella putrefaciens 200], gi\|12450... gi\|146294791, gi... - gi\|146294791\|ref\|YP_001185215.1\| pilus assembly protein, PilQ [Shewanella putrefaciens CN-32], gi\|14... gi\|82719128, gi\|... - gi\|82743514\|ref\|ZP_00906156.1\| type IV pilus biogenesis protein PilP [Shewanella sp. W3-18-1], gi\|82...	221.0	[0..1]	[171..2]
gi\|67158016 - gi\|67158016\|ref\|ZP_00419106.1\| Pilus assembly protein, PilQ [Azotobacter vinelandii AvOP] gi\|226721470, gi... - gi\|67158016\|ref\|ZP_00419106.1\| Pilus assembly protein, PilQ [Azotobacter vinelandii AvOP], gi\|670849...	220.0	[0..1]	[168..1]
gi\|46911919, gi\|... - gi\|54307499\|ref\|YP_128519.1\| fimbrial assembly protein PilP [Photobacterium profundum SS9], gi\|46911...	220.0	[0..4]	[171..6]
gi\|28872242, gi\|... - gi\|28872242\|ref\|NP_794861.1\| type IV pilus biogenesis protein PilP [Pseudomonas syringae pv. tomato ... tr\|Q87V12\|Q87V12... - Type IV pilus biogenesis protein PilP OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=pilP PE=... gi\|213969445, gi... - gi\|213969445\|ref\|ZP_03397582.1\| type IV pilus biogenesis protein PilP [Pseudomonas syringae pv. toma...	220.0	[0..1]	[168..1]
gi\|28899521, gi\|... - gi\|28899521\|ref\|NP_799126.1\| putative fimbrial assembly protein PilP [Vibrio parahaemolyticus RIMD 2... gi\|28807757 - gi\|28807757\|dbj\|BAC61010.1\| putative fimbrial assembly protein PilP [Vibrio parahaemolyticus RIMD 22...	218.0	[0..2]	[168..4]

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Predicted Domain #1

Region A:
Residues: [1-78]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTLPLLAIS LFLMGCIGER SDLELFVTTT KAQHVAHIPP LKEPPKFEHF AYQAELMRSP  60
   61 FVPPSRELTE EVVDTSKN

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.954
Match:	2a96A
Description:	No description for 2a96A was found.

Predicted Domain #2

Region A:
Residues: [79-171]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CLQPDLKRRK GRLETYALDN LKMRGTLSEA NLTWALIETN DGSVYRMGVG EYLGLFNGRI  60
   61 AKVAPQNVEV VELIPDGSGC WSERTNNIEL SGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.522879
Match:	2ivwA
Description:	No description for 2ivwA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits