YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24345704, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	206 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24345704, gi|....

Description	E-value	Query Range	Subject Range
gi\|126176301, gi... - gi\|68540923\|ref\|ZP_00580671.1\| Pilus assembly protein, PilO [Shewanella baltica OS155], gi\|68521308\|...	230.0	[0..1]	[206..1]
gi\|153002586, gi... - gi\|153002586\|ref\|YP_001368267.1\| pilus assembly protein PilO [Shewanella baltica OS185], gi\|15136720... gi\|160862829, gi... - gi\|160877307\|ref\|YP_001556623.1\| pilus assembly protein PilO [Shewanella baltica OS195], gi\|16086282...	228.0	[0..1]	[206..1]
gi\|78692406, gi\|... - gi\|78692406\|ref\|ZP_00856937.1\| type IV pilus biogenesis protein PilO [Shewanella sp. MR-7], gi\|78508... gi\|113886712, gi... - gi\|82497273\|ref\|ZP_00882830.1\| type IV pilus biogenesis protein PilO [Shewanella sp. MR-4], gi\|82404...	227.0	[0..1]	[206..1]
gi\|117922329, gi... - gi\|78688066\|ref\|ZP_00852790.1\| type IV pilus biogenesis protein PilO [Shewanella sp. ANA-3], gi\|7850...	224.0	[0..1]	[206..1]
gi\|124548505, gi... - gi\|124548505\|ref\|ZP_01707146.1\| Pilus assembly protein, PilO [Shewanella putrefaciens 200], gi\|12450... gi\|82719127, gi\|... - gi\|82743513\|ref\|ZP_00906155.1\| type IV pilus biogenesis protein PilO [Shewanella sp. W3-18-1], gi\|82... gi\|146294792, gi... - gi\|146294792\|ref\|YP_001185216.1\| pilus assembly protein, PilO [Shewanella putrefaciens CN-32], gi\|14...	218.0	[0..1]	[206..1]
gi\|68545228, gi\|... - gi\|68545228\|ref\|ZP_00584779.1\| Pilus assembly protein, PilO [Shewanella amazonensis SB2B], gi\|685170...	215.0	[0..1]	[206..1]
gi\|152986380, gi... - gi\|94415413\|ref\|ZP_01295254.1\| hypothetical protein PaerP_01002781 [Pseudomonas aeruginosa PA7], gi\|...	208.0	[0..7]	[197..14]
gi\|7465486, gi\|5... - pir\|\|S77728 type 4 fimbrial biogenesis protein PilO PA5042 [imported] - Pseudomonas aeruginosa, gi\|... gi\|15600235, gi\|... - gi\|9951332\|gb\|AAG08427.1\|AE004917_6 type 4 fimbrial biogenesis protein PilO [Pseudomonas aeruginosa ... gi\|107104142 - gi\|107104142\|ref\|ZP_01368060.1\| hypothetical protein PaerPA_01005215 [Pseudomonas aeruginosa PACS2] gi\|254244076, gi... - gi\|84323871\|ref\|ZP_00971938.1\| COG3167: Tfp pilus assembly protein PilO [Pseudomonas aeruginosa 2192... gi\|218894141, gi... - gi\|218894141\|ref\|YP_002443010.1\| type 4 fimbrial biogenesis protein PilO [Pseudomonas aeruginosa LES...	206.0	[0..7]	[197..14]
gi\|77380638, gi\|... - gi\|77456635\|ref\|YP_346140.1\| pilus assembly protein, PilO [Pseudomonas fluorescens Pf0-1], gi\|773806...	206.0	[0..7]	[197..14]
gi\|49079420 - gi\|49079420\|gb\|AAT49890.1\| PA5042 [synthetic construct]	206.0	[0..7]	[197..14]

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Predicted Domain #1

Region A:
Residues: [1-206]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLDLSQFND IDFENIGGWP NQVKVFFAIL LALCVFAAGY FVVLSDAIDI FSSEQDKELQ  60
   61 LRDDFKNKYQ LAANLKLYRE QLAVMEGQFA ELLKMLPSEN EMPGLLDDLT FAATDAGLRI 120
  121 KSLNWEAEIG RDFYIEFPIK MSVTGDYHQI GNMVSGVAKL PRIVSLHDFT IKRDDSGNLA 180
  181 MDILAKTYRF KEGAELPPEK PNKGGK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	40.79588
Match:	PF04350.4
Description:	No description for PF04350.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits