YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24371880, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	194 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24371880, gi|....

Description	E-value	Query Range	Subject Range
gi\|71900201, gi\|... - gi\|71900201\|ref\|ZP_00682340.1\| Fimbrial assembly [Xylella fastidiosa Ann-1], gi\|71730034\|gb\|EAO32126...	197.0	[0..1]	[190..1]
gi\|182682305, gi... - gi\|182682305\|ref\|YP_001830465.1\| fimbrial assembly family protein [Xylella fastidiosa M23], gi\|18263... gi\|28199569, gi\|... - gi\|28199569\|ref\|NP_779883.1\| fimbrial assembly membrane protein [Xylella fastidiosa Temecula1], gi\|2...	197.0	[0..1]	[190..1]
gi\|71729133, gi\|... - gi\|71901090\|ref\|ZP_00683198.1\| Fimbrial assembly [Xylella fastidiosa Ann-1], gi\|71729133\|gb\|EAO31256... gi\|167965733, gi... - gi\|170730940\|ref\|YP_001776373.1\| fimbrial assembly membrane protein [Xylella fastidiosa M12], gi\|167... gi\|71276557, gi\|... - gi\|71276557\|ref\|ZP_00652831.1\| Fimbrial assembly [Xylella fastidiosa Dixon], gi\|71162628\|gb\|EAO12356...	197.0	[0..1]	[190..1]
gi\|53726588, gi\|... - gi\|53726588\|ref\|ZP_00347627.1\| COG3166: Tfp pilus assembly protein PilN [Pseudomonas aeruginosa UCBP...	195.0	[0..1]	[194..1]
gi\|218774370, gi... - gi\|218894142\|ref\|YP_002443011.1\| type 4 fimbrial biogenesis protein PilN [Pseudomonas aeruginosa LES... gi\|530857, gi\|74... - pir\|\|S77727 type 4 fimbrial biogenesis protein PilN PA5043 [imported] - Pseudomonas aeruginosa (stra... gi\|15600236, gi\|... - gi\|9951333\|gb\|AAG08428.1\|AE004917_7 type 4 fimbrial biogenesis protein PilN [Pseudomonas aeruginosa ... gi\|107104143 - gi\|107104143\|ref\|ZP_01368061.1\| hypothetical protein PaerPA_01005216 [Pseudomonas aeruginosa PACS2] gi\|254244075, gi... - gi\|84323870\|ref\|ZP_00971937.1\| COG3166: Tfp pilus assembly protein PilN [Pseudomonas aeruginosa 2192...	194.0	[0..1]	[194..1]
gi\|15836972, gi\|... - gi\|9105200\|gb\|AAF83180.1\|AE003888_13 fimbrial assembly membrane protein [Xylella fastidiosa 9a5c], g... gi\|11282614 - pir\|\|A82816 fimbrial assembly membrane protein XF0370 [imported] - Xylella fastidiosa (strain 9a5c)	194.0	[0..1]	[190..1]
gi\|84317710, gi\|... - gi\|84317710\|ref\|ZP_00966148.1\| COG3166: Tfp pilus assembly protein PilN [Pseudomonas aeruginosa C371...	193.0	[0..1]	[194..1]
gi\|90022335, gi\|... - gi\|90022335\|ref\|YP_528162.1\| periplasmic sensor signal transduction histidine kinase [Saccharophagus...	190.0	[0..1]	[185..1]
gi\|21109736, gi\|... - gi\|21244109\|ref\|NP_643691.1\| fimbrial assembly membrane protein [Xanthomonas axonopodis pv. citri st...	189.0	[0..1]	[193..1]
gi\|94415414, gi\|... - gi\|94415414\|ref\|ZP_01295255.1\| hypothetical protein PaerP_01002782 [Pseudomonas aeruginosa PA7], gi\|...	188.0	[0..1]	[194..1]

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Predicted Domain #1

Region A:
Residues: [1-194]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANINLLPWR EEAREKQKRD YIGILAAVFL GSGILVYVAL SLLEIMTDEQ RERNAYLQSE  60
   61 VQQLETQIAE IKKITERKKD IERRTEIILN LQQSRNLPTH VLDELVRIVP PGIYLSSLEK 120
  121 KGSLLLIEGR SESNNNVANM MRKVKASEWL TDPNMQSIVT QDDELRQLQR FSLRVSIKGA 180
  181 IAEEPAKPAK GASK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	41.481486
Match:	PF05137.4
Description:	No description for PF05137.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits