YRC Public Data Repository - Protein Structure Prediction

Protein:	ARGB_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	260 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARGB_SHEON.

Description	E-value	Query Range	Subject Range
gi\|83595903 - gi\|83595903\|gb\|ABC25264.1\| acetylglutamate kinase [uncultured marine bacterium Ant4E12]	226.0	[0..4]	[260..54]
ARGB_THEMA - Acetylglutamate kinase OS=Thermotoga maritima GN=argB PE=1 SV=1 ARGB_THEMA - Acetylglutamate kinase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=a...	225.0	[0..5]	[259..21]
gi\|86356085, gi\|... - gi\|86356085\|ref\|YP_467977.1\| acetylglutamate kinase [Rhizobium etli CFN 42], gi\|86280187\|gb\|ABC89250...	223.0	[0..5]	[260..92]
ARGB_RHIL3 - Acetylglutamate kinase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=argB PE=3 SV=1	218.0	[0..5]	[260..25]
ARGB_METFK - Acetylglutamate kinase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=argB PE...	217.0	[0..6]	[258..27]
gi\|241883990, gi... - gi\|241903683\|ref\|ZP_04788403.1\| acetylglutamate kinase [Thermoanaerobacter brockii subsp. finnii Ako... ARGB_THEP3 - Acetylglutamate kinase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=argB PE=3...	217.0	[0..3]	[258..27]
ARGB_NITMU - Acetylglutamate kinase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=argB PE=3 SV...	217.0	[0..3]	[259..24]
ARGB_SYNE7 - Acetylglutamate kinase OS=Synechococcus elongatus (strain PCC 7942) GN=argB PE=1 SV=1 ARGB_SYNP6 - Acetylglutamate kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=argB PE=...	216.0	[0..5]	[259..29]
ARGB_NOSP7 - Acetylglutamate kinase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=argB PE=3 SV=1	216.0	[0..5]	[258..32]
ARGB_NITEC - Acetylglutamate kinase OS=Nitrosomonas eutropha (strain C91) GN=argB PE=3 SV=1	216.0	[0..3]	[259..24]

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Predicted Domain #1

Region A:
Residues: [1-260]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTNNSVLVL KVGGALLQCE MGMARLMDTA AAMIANGQQV LMVHGGGCLV DEQLAANGME  60
   61 TVKLEGLRVT PPEQMPIIAG ALAGTSNKIL QGAATKAGIV SVGMCLADGN TVSAKIKDER 120
  121 LGLVGEVYPK DATYLKFILS QGWMPICSSI AMMDDGQMLN VNADQAATVL AKLVGGKLVL 180
  181 LSDVSGVLDG KGQLIPSLNG QQIADLVKQG VIEKGMKVKV EAALEVAQWM GQAVQVASWR 240
  241 DASQLVALAK GEAVGTQIQP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.221849
Match:	1gs5A
Description:	N-acetyl-l-glutamate kinase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
acetylglutamate kinase activity	3.62493177730942	bayes_pls_golite062009
phosphotransferase activity, carboxyl group as acceptor	3.23203925555954	bayes_pls_golite062009
catalytic activity	3.20382750184555	bayes_pls_golite062009
amino acid kinase activity	2.69040298093296	bayes_pls_golite062009
transferase activity	2.54481238004476	bayes_pls_golite062009
glutamate 5-kinase activity	2.08203900247141	bayes_pls_golite062009
aspartate kinase activity	2.03700691370413	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	1.89315414622708	bayes_pls_golite062009
kinase activity	1.84529070582231	bayes_pls_golite062009
acetyl-CoA:L-glutamate N-acetyltransferase activity	1.28280910531626	bayes_pls_golite062009
N-acetyl-gamma-glutamyl-phosphate reductase activity	0.72506602549224	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: