YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24345681, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	659 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24345681, gi|....

Description	E-value	Query Range	Subject Range
gi\|77957976 - gi\|77957976\|ref\|ZP_00822018.1\| COG1138: Cytochrome c biogenesis factor [Yersinia bercovieri ATCC 439...	609.0	[0..1]	[653..1]
gi\|77975552 - gi\|77975552\|ref\|ZP_00831087.1\| COG1138: Cytochrome c biogenesis factor [Yersinia frederiksenii ATCC ...	606.0	[0..1]	[653..1]
gi\|77979092 - gi\|77979092\|ref\|ZP_00834513.1\| COG1138: Cytochrome c biogenesis factor [Yersinia intermedia ATCC 299...	605.0	[0..1]	[653..1]
gi\|90411054, gi\|... - gi\|90411054\|ref\|ZP_01219068.1\| Putative cytochrome c-type biogenesis protein CcmF [Photobacterium pr...	604.0	[0..1]	[655..1]
gi\|194536766, gi... - gi\|75818718\|ref\|ZP_00748847.1\| COG1138: Cytochrome c biogenesis factor [Vibrio cholerae V51], gi\|254...	603.0	[0..1]	[648..1]
gi\|77962599 - gi\|77962599\|ref\|ZP_00826417.1\| COG1138: Cytochrome c biogenesis factor [Yersinia mollaretii ATCC 439...	603.0	[0..1]	[653..1]
gi\|194535414, gi... - gi\|75822837\|ref\|ZP_00752396.1\| COG1138: Cytochrome c biogenesis factor [Vibrio cholerae RC385], gi\|2... tr\|D7HAA4\|D7HAA4... - Cytochrome c-type biogenesis protein CcmF OS=Vibrio cholerae RC385 GN=VCRC385_01383 PE=4 SV=1	603.0	[0..1]	[648..1]
gi\|51596963, gi\|... - gi\|51596963\|ref\|YP_071154.1\| putative cytochrome c-type biogenesis protein [Yersinia pseudotuberculo... gi\|152959491, gi... - gi\|77629692\|ref\|ZP_00792278.1\| COG1138: Cytochrome c biogenesis factor [Yersinia pseudotuberculosis ... gi\|169750276, gi... - gi\|170023742\|ref\|YP_001720247.1\| cytochrome c-type biogenesis protein CcmF [Yersinia pseudotuberculo... gi\|186699072, gi... - gi\|186896046\|ref\|YP_001873158.1\| cytochrome c-type biogenesis protein CcmF [Yersinia pseudotuberculo... Q668U3\|Q668U3_YERPS - Putative cytochrome c-type biogenesis protein precursor - Yersinia pseudotuberculosis	602.0	[0..1]	[646..1]
gi\|229519042, gi... - gi\|229519042\|ref\|ZP_04408485.1\| cytochrome c heme lyase subunit CcmF [Vibrio cholerae RC9], gi\|22934... gi\|153222238, gi... - gi\|153222238\|ref\|ZP_01953017.1\| cytochrome c-type biogenesis protein CcmF [Vibrio cholerae MAK 757],... gi\|229607403, gi... - gi\|229607403\|ref\|YP_002878051.1\| cytochrome c heme lyase subunit CcmF [Vibrio cholerae MJ-1236], gi\|... gi\|15642052, gi\|... - gi\|9656597\|gb\|AAF95198.1\| cytochrome c-type biogenesis protein CcmF [Vibrio cholerae O1 biovar El To... gi\|153819549, gi... - gi\|153819549\|ref\|ZP_01972216.1\| cytochrome c-type biogenesis protein CcmF [Vibrio cholerae NCTC 8457... gi\|11254760 - pir\|\|F82124 cytochrome c-type biogenesis protein CcmF VC2052 [imported] - Vibrio cholerae (strain N1... gi\|254849139, gi... - gi\|75829264\|ref\|ZP_00758573.1\| COG1138: Cytochrome c biogenesis factor [Vibrio cholerae MO10], gi\|25... gi\|147674378, gi... - gi\|75827361\|ref\|ZP_00756796.1\| COG1138: Cytochrome c biogenesis factor [Vibrio cholerae O395], gi\|22... gi\|75814806, gi\|... - gi\|75814806\|ref\|ZP_00745354.1\| COG1138: Cytochrome c biogenesis factor [Vibrio cholerae V52], gi\|121... gi\|227010067, gi... - gi\|227082179\|ref\|YP_002810730.1\| cytochrome c-type biogenesis protein CcmF [Vibrio cholerae M66-2], ...	602.0	[0..1]	[648..1]
gi\|162419593, gi... - gi\|77635286\|ref\|ZP_00797372.1\| COG1138: Cytochrome c biogenesis factor [Yersinia pestis Angola], gi\|... gi\|165925290, gi... - gi\|165925290\|ref\|ZP_02221122.1\| cytochrome c-type biogenesis protein CcmF [Yersinia pestis biovar Or... gi\|165992436, gi... - gi\|166008054\|ref\|ZP_02228952.1\| cytochrome c-type biogenesis protein CcmF [Yersinia pestis biovar An... gi\|229898871, gi... - gi\|229898871\|ref\|ZP_04514016.1\| putative cytochrome c-type biogenesis protein [Yersinia pestis biova... gi\|229680177, gi... - gi\|229902730\|ref\|ZP_04517847.1\| putative cytochrome c-type biogenesis protein [Yersinia pestis Nepal... gi\|166214224, gi... - gi\|166214224\|ref\|ZP_02240259.1\| cytochrome c-type biogenesis protein CcmF [Yersinia pestis biovar An... gi\|229895335, gi... - gi\|229895335\|ref\|ZP_04510508.1\| putative cytochrome c-type biogenesis protein [Yersinia pestis Pesto... gi\|167398820, gi... - gi\|167398820\|ref\|ZP_02304344.1\| cytochrome c-type biogenesis protein CcmF [Yersinia pestis biovar An... gi\|229838306, gi... - gi\|229838306\|ref\|ZP_04458465.1\| putative cytochrome c-type biogenesis protein [Yersinia pestis biova... gi\|167421146, gi... - gi\|167421146\|ref\|ZP_02312899.1\| cytochrome c-type biogenesis protein CcmF [Yersinia pestis biovar Or... gi\|167056481, gi... - gi\|167424599\|ref\|ZP_02316352.1\| cytochrome c-type biogenesis protein CcmF [Yersinia pestis biovar Me... gi\|21958360, gi\|... - gi\|22125467\|ref\|NP_668890.1\| cytochrome c-type biogenesis protein [Yersinia pestis KIM], gi\|21958360... gi\|167467416 - gi\|167467416\|ref\|ZP_02332120.1\| cytochrome c-type biogenesis protein CcmF [Yersinia pestis FV-1] gi\|25285360 - pir\|\|AC0334 probable cytochrome c-type biogenesis protein ccmF [imported] - Yersinia pestis (strain ... gi\|15980717, gi\|... - gi\|218929811\|ref\|YP_002347686.1\| putative cytochrome c-type biogenesis protein [Yersinia pestis CO92... gi\|165914893, gi... - gi\|89103124\|ref\|ZP_01175716.1\| COG1138: Cytochrome c biogenesis factor [Yersinia pestis biovar Orien... gi\|45437078, gi\|... - gi\|45442214\|ref\|NP_993753.1\| putative cytochrome c-type biogenesis protein [Yersinia pestis biovar M... gi\|108808099, gi... - gi\|108808099\|ref\|YP_652015.1\| putative cytochrome c-type biogenesis protein [Yersinia pestis Antiqua... gi\|145210995, gi... - gi\|145599299\|ref\|YP_001163375.1\| cytochrome c-type biogenesis protein [Yersinia pestis Pestoides F],... gi\|149365213, gi... - gi\|149365213\|ref\|ZP_01887248.1\| putative cytochrome c-type biogenesis protein [Yersinia pestis CA88-...	602.0	[0..1]	[646..1]

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Predicted Domain #1

Region A:
Residues: [1-200]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPELGHFSL IIGVAFAFLL TSVPLIGVAR KDQYLVRYAW PLAYGMFFFI ALSVVSLGYS  60
   61 FAVDDFSVAY VAHHSNSQLP IFFKIAAVWG GHEGSLLFWV FALSTWAASV ALFSKGLEEV 120
  121 FTARVLAVLA LIVIGFSLFM LLTSSPFERI FPMPAEGRDL NPMLQDVGLI FHPPMLYLGY 180
  181 VGFSVSFAFA IAALMSGHLD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [201-337]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SAWARWSRPW TLAAWVFLTG GIALGSWWAY YELGWGGWWF WDPVENASFM PWLVGTALVH  60
   61 SLIVTEKRGA FRNWTVLLSI FAFSLSLLGT FIVRSGVLTS VHSFAADPSR GMFILLLLGL 120
  121 AIGGSLTLFA FRASEMS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [338-432]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPARFELKSK ETMLLVCNVL LTVAAGTVLL GTLYPLLIDA LGMGKISVGP PYFNAVFVPI  60
   61 VLVLFAFMGV GPIIRWKKSK AGELKRQLLV PALVS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [433-659]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LVIGIVTPFI VDGAFNAWVA CGIAAAAWII LATAKAAYSI VKPKDGEVSI ARMGRSQLGM  60
   61 IIAHLGIAVS VIGATMVSNY SVEKSVRMGP GVSQELAGYT FKYLETKNVV GPNYTAQQGQ 120
  121 IEIYKGDKLL TLLKPDRRQY NVRTMDMTEA GIDWGLFRDL YVTMGDPISS TEFAVRLNYK 180
  181 PFVRWLWFGA IFMMVGGFFA ASDKRYRSKV AATVKPQAEK AKLATAQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits