YRC Public Data Repository - Protein Structure Prediction

Protein:	CCME_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	161 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCME_SHEON.

Description	E-value	Query Range	Subject Range
CCME_ECO8A - Cytochrome c-type biogenesis protein CcmE OS=Escherichia coli O8 (strain IAI1) GN=ccmE PE=3 SV=1 gi\|190904574, gi... - gi\|75231465\|ref\|ZP_00717834.1\| COG2332: Cytochrome c-type biogenesis protein CcmE [Escherichia coli ...	227.0	[0..1]	[160..1]
gi\|168780049, gi... - gi\|189002085\|gb\|EDU71071.1\| cytochrome c-type biogenesis protein CcmE [Escherichia coli O157:H7 str.... gi\|187771084, gi... - gi\|187771084\|gb\|EDU34928.1\| cytochrome c-type biogenesis protein CcmE [Escherichia coli O157:H7 str.... gi\|189375595, gi... - gi\|189375595\|gb\|EDU94011.1\| cytochrome c-type biogenesis protein CcmE [Escherichia coli O157:H7 str.... gi\|168787106, gi... - gi\|189372969\|gb\|EDU91385.1\| cytochrome c-type biogenesis protein CcmE [Escherichia coli O157:H7 str.... gi\|194434232, gi... - gi\|194434232\|ref\|ZP_03066499.1\| cytochrome c-type biogenesis protein CcmE [Shigella dysenteriae 1012... CCME_ECODH - Cytochrome c-type biogenesis protein CcmE OS=Escherichia coli (strain K12 / DH10B) GN=ccmE PE=3 SV=1 gi\|208727309, gi... - gi\|208807508\|ref\|ZP_03249845.1\| cytochrome c-type biogenesis protein CcmE [Escherichia coli O157:H7 ... gi\|195935577 - gi\|195935577\|ref\|ZP_03080959.1\| cytochrome c-type biogenesis protein CcmE [Escherichia coli O157:H7 ... gi\|168754947, gi... - gi\|189357674\|gb\|EDU76093.1\| cytochrome c-type biogenesis protein CcmE [Escherichia coli O157:H7 str.... gi\|188016120, gi... - gi\|188016120\|gb\|EDU54242.1\| cytochrome c-type biogenesis protein CcmE [Escherichia coli O157:H7 str.... gi\|189362847, gi... - gi\|189362847\|gb\|EDU81266.1\| cytochrome c-type biogenesis protein CcmE [Escherichia coli O157:H7 str.... gi\|168764692, gi... - gi\|189365349\|gb\|EDU83765.1\| cytochrome c-type biogenesis protein CcmE [Escherichia coli O157:H7 str.... CCME_ECOK1 - Cytochrome c-type biogenesis protein CcmE OS=Escherichia coli O1:K1 / APEC GN=ccmE PE=3 SV=1 gi\|124501837, gi... - gi\|124526366\|ref\|ZP_01698319.1\| CcmE/CycJ protein [Escherichia coli B], gi\|124501837\|gb\|EAY49298.1\| ... CCME_ECOL6 - Cytochrome c-type biogenesis protein CcmE OS=Escherichia coli O6 GN=ccmE PE=3 SV=1 CCME_SHIFL - Cytochrome c-type biogenesis protein CcmE OS=Shigella flexneri GN=ccmE PE=3 SV=1 gi\|24052635, gi\|... - gi\|24113583\|ref\|NP_708093.1\| cytochrome c-type biogenesis protein CcmE [Shigella flexneri 2a str. 30... CCME_ECOL6 - Cytochrome c-type biogenesis protein CcmE OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / U... gi\|30041890, gi\|... - gi\|30063637\|ref\|NP_837808.1\| cytochrome c-type biogenesis protein CcmE [Shigella flexneri 2a str. 24... CCME_ECOUT - Cytochrome c-type biogenesis protein CcmE OS=Escherichia coli (strain UTI89 / UPEC) GN=ccmE PE=3 SV=... CCME_ECO57 - Cytochrome c-type biogenesis protein CcmE OS=Escherichia coli O157:H7 GN=ccmE PE=3 SV=1 gi\|15832340, gi\|... - gi\|15832340\|ref\|NP_311113.1\| cytochrome c-type biogenesis protein CcmE [Escherichia coli O157:H7 str... EG12055 - periplasmic heme chaperone / Heme chaperone, membrane-anchored, periplasmic CCME_ECOL5 - Cytochrome c-type biogenesis protein CcmE OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=ccmE... gi\|12516529, gi\|... - gi\|15802750\|ref\|NP_288777.1\| cytochrome c-type biogenesis protein CcmE [Escherichia coli O157:H7 EDL... CCME_SHIDS - Cytochrome c-type biogenesis protein CcmE OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=ccmE ... gi\|227887254, gi... - gi\|227887254\|ref\|ZP_04005059.1\| cytochrome c family biogenesis protein CcmE [Escherichia coli 83972]... gi\|188490050, gi... - gi\|75514439\|ref\|ZP_00736717.1\| COG2332: Cytochrome c-type biogenesis protein CcmE [Escherichia coli ... gi\|237704670, gi... - gi\|237704670\|ref\|ZP_04535151.1\| periplasmic heme chaperone [Escherichia sp. 3_2_53FAA], gi\|226901036... gi\|75259669, gi\|... - gi\|75259669\|ref\|ZP_00730971.1\| COG2332: Cytochrome c-type biogenesis protein CcmE [Escherichia coli ... CCME_ECOBW - Cytochrome c-type biogenesis protein CcmE OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=ccmE... gi\|191170182, gi... - gi\|75243013\|ref\|ZP_00726719.1\| COG2332: Cytochrome c-type biogenesis protein CcmE [Escherichia coli ... gi\|251785560, gi... - gi\|251785560\|ref\|YP_002999864.1\| hypothetical protein B21_02083 [Escherichia coli BL21], gi\|24237783... CCME_SHIF8 - Cytochrome c-type biogenesis protein CcmE OS=Shigella flexneri serotype 5b (strain 8401) GN=ccmE PE=... gi\|253772879, gi... - gi\|254288970\|ref\|YP_003054718.1\| periplasmic heme chaperone [Escherichia coli BL21(DE3)], gi\|2539782... gi\|254162209, gi... - gi\|254162209\|ref\|YP_003045317.1\| periplasmic heme chaperone [Escherichia coli B str. REL606], gi\|253... EG12055 - periplasmic heme chaperone / Heme chaperone, membrane-anchored, periplasmic gi\|85675304, gi\|... - gi\|89109013\|ref\|AP_002793.1\| periplasmic heme chaperone [Escherichia coli str. K-12 substr. W3110], ... gi\|254593496, gi... - gi\|254794096\|ref\|YP_003078933.1\| periplasmic heme chaperone [Escherichia coli O157:H7 str. TW14359],... CCME_SHIBS - Cytochrome c-type biogenesis protein CcmE OS=Shigella boydii serotype 4 (strain Sb227) GN=ccmE PE=3 ... CCME_SHIB3 - Cytochrome c-type biogenesis protein CcmE OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512... gi\|83588181, gi\|... - gi\|83588181\|ref\|ZP_00926806.1\| COG2332: Cytochrome c-type biogenesis protein CcmE [Escherichia coli ... gi\|193068142, gi... - gi\|75237991\|ref\|ZP_00721996.1\| COG2332: Cytochrome c-type biogenesis protein CcmE [Escherichia coli ... gi\|75211613, gi\|... - gi\|75211613\|ref\|ZP_00711692.1\| COG2332: Cytochrome c-type biogenesis protein CcmE [Escherichia coli ... CCME_ECOHS - Cytochrome c-type biogenesis protein CcmE OS=Escherichia coli O9:H4 (strain HS) GN=ccmE PE=3 SV=1 CCME_ECO24 - Cytochrome c-type biogenesis protein CcmE OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=cc... sp\|B7UFL0\|CCME_ECO27 - Cytochrome c-type biogenesis protein CcmE OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=cc... CCME_ECOLC - Cytochrome c-type biogenesis protein CcmE OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks)... CCME_ECO7I - Cytochrome c-type biogenesis protein CcmE OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=ccmE P... CCME_ECO55 - Cytochrome c-type biogenesis protein CcmE OS=Escherichia coli (strain 55989 / EAEC) GN=ccmE PE=3 SV=... CCME_ECOLU - Cytochrome c-type biogenesis protein CcmE OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN... gi\|208741997, gi... - gi\|208821874\|ref\|ZP_03262194.1\| cytochrome c-type biogenesis protein CcmE [Escherichia coli O157:H7 ... gi\|208813095, gi... - gi\|208813095\|ref\|ZP_03254424.1\| cytochrome c-type biogenesis protein CcmE [Escherichia coli O157:H7 ... CCME_ECOSE - Cytochrome c-type biogenesis protein CcmE OS=Escherichia coli (strain SE11) GN=ccmE PE=3 SV=1 CCME_ECO5E - Cytochrome c-type biogenesis protein CcmE OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=ccmE... CCME_ESCF3 - Cytochrome c-type biogenesis protein CcmE OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 /... CCME_ECO27 - Cytochrome c-type biogenesis protein CcmE OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=cc... CCME_ECO81 - Cytochrome c-type biogenesis protein CcmE OS=Escherichia coli O81 (strain ED1a) GN=ccmE PE=3 SV=1 CCME_ECO45 - Cytochrome c-type biogenesis protein CcmE OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=ccmE PE... CCME_ECOLI - Cytochrome c-type biogenesis protein ccmE (Cytochrome c maturation protein E) (Heme chaperone ccmE) ...	227.0	[0..1]	[160..1]
CCME_SHISS - Cytochrome c-type biogenesis protein CcmE OS=Shigella sonnei (strain Ss046) GN=ccmE PE=3 SV=1	225.0	[0..1]	[160..1]
gi\|194447400, gi... - gi\|194450930\|ref\|YP_002047846.1\| cytochrome c-type biogenesis protein CcmE [Salmonella enterica subs... gi\|197262237, gi... - gi\|197265750\|ref\|ZP_03165824.1\| ABC family protein [Salmonella enterica subsp. enterica serovar Sain... lcl\|NC_016856.1_... - [gene=ccmE_1] [protein=cytochrome c-type biogenesis protein CcmE] [protein_id=YP_005238316.1] [locat... gi\|205329412, gi... - gi\|205329412\|gb\|EDZ16176.1\| ABC family protein [Salmonella enterica subsp. enterica serovar 4,[5],12... gi\|168242361, gi... - gi\|205339032\|gb\|EDZ25796.1\| ABC family protein [Salmonella enterica subsp. enterica serovar Heidelbe... gi\|238913969 - gi\|238913969\|ref\|ZP_04657806.1\| cytochrome c-type biogenesis protein CcmE [Salmonella enterica subsp... CCME_SALTY - Cytochrome c-type biogenesis protein ccmE OS=Salmonella typhimurium GN=ccmE1 PE=3 SV=1 CCME_SALTY - Cytochrome c-type biogenesis protein CcmE OS=Salmonella typhimurium GN=ccmE1 PE=3 SV=1 CCME_SALTY - Cytochrome c-type biogenesis protein CcmE OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 70... gi\|199604595, gi... - gi\|200388964\|ref\|ZP_03215576.1\| ABC family protein [Salmonella enterica subsp. enterica serovar Virc...	224.0	[0..1]	[160..1]
gi\|213982470 - gi\|213982470\|ref\|ZP_03409729.1\| cytochrome c-type biogenesis protein E2 [Salmonella enterica subsp. ... gi\|213864996 - gi\|213864996\|ref\|ZP_03387115.1\| cytochrome c-type biogenesis protein E2 [Salmonella enterica subsp. ... gi\|213649798 - gi\|213649798\|ref\|ZP_03379851.1\| cytochrome c-type biogenesis protein E2 [Salmonella enterica subsp. ... CCME_SALPA - Cytochrome c-type biogenesis protein CcmE OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=c... gi\|213622129 - gi\|213622129\|ref\|ZP_03374912.1\| cytochrome c-type biogenesis protein E2 [Salmonella enterica subsp. ... gi\|214002762 - gi\|214002762\|ref\|ZP_03413497.1\| cytochrome c-type biogenesis protein E2 [Salmonella enterica subsp. ... gi\|213028718 - gi\|213028718\|ref\|ZP_03343165.1\| cytochrome c-type biogenesis protein E2 [Salmonella enterica subsp. ... CCME_SALPA - Cytochrome c-type biogenesis protein CcmE OS=Salmonella paratyphi A GN=ccmE1 PE=3 SV=1 gi\|197093260, gi... - gi\|197364622\|ref\|YP_002144259.1\| cytochrome c-type biogenesis protein CcmE [Salmonella enterica subs... gi\|161366294, gi... - gi\|161616930\|ref\|YP_001590895.1\| cytochrome c-type biogenesis protein CcmE [Salmonella enterica subs... gi\|213582978 - gi\|213582978\|ref\|ZP_03364804.1\| cytochrome c-type biogenesis protein E2 [Salmonella enterica subsp. ... gi\|213426282 - gi\|213426282\|ref\|ZP_03359032.1\| cytochrome c-type biogenesis protein E2 [Salmonella enterica subsp. ... gi\|213417326 - gi\|213417326\|ref\|ZP_03350469.1\| cytochrome c-type biogenesis protein E2 [Salmonella enterica subsp. ... gi\|213051720 - gi\|213051720\|ref\|ZP_03344598.1\| cytochrome c-type biogenesis protein E2 [Salmonella enterica subsp. ... gi\|16761178, gi\|... - gi\|16762507\|ref\|NP_458124.1\| cytochrome c-type biogenesis protein CcmE [Salmonella enterica subsp. e... CCME_SALTI - Cytochrome c-type biogenesis protein CcmE OS=Salmonella typhi GN=ccmE1 PE=3 SV=1 CCME_SALTI - Cytochrome c-type biogenesis protein ccmE OS=Salmonella typhi GN=ccmE1 PE=3 SV=1 gi\|29141128, gi\|... - gi\|29143996\|ref\|NP_807338.1\| cytochrome c-type biogenesis protein CcmE [Salmonella enterica subsp. e...	224.0	[0..1]	[160..1]
CCME_VIBPA - Cytochrome c-type biogenesis protein CcmE OS=Vibrio parahaemolyticus GN=ccmE PE=3 SV=1 gi\|149749763, gi... - gi\|153836990\|ref\|ZP_01989657.1\| ABC superfamily [Vibrio parahaemolyticus AQ3810], gi\|149749763\|gb\|ED... CCME_VIBPA - Cytochrome c-type biogenesis protein CcmE OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 221...	224.0	[0..1]	[160..1]
CCME1_SALCH - Cytochrome c-type biogenesis protein CcmE 1 OS=Salmonella choleraesuis GN=ccmE1 PE=3 SV=1 CCME1_SALCH - Cytochrome c-type biogenesis protein CcmE 1 OS=Salmonella choleraesuis (strain SC-B67) GN=ccmE1 PE=3... gi\|224470143, gi... - gi\|224585615\|ref\|YP_002639414.1\| periplasmic heme-dependent peroxidase [Salmonella enterica subsp. e... CCME1_SALCH - Cytochrome c-type biogenesis protein ccmE 1 OS=Salmonella choleraesuis GN=ccmE1 PE=3 SV=1	223.0	[0..1]	[160..1]
gi\|91223575, gi\|... - gi\|91223575\|ref\|ZP_01258840.1\| cytochrome c-type biogenesis protein CcmE [Vibrio alginolyticus 12G01... gi\|75854960, gi\|... - gi\|75854960\|ref\|ZP_00762627.1\| COG2332: Cytochrome c-type biogenesis protein CcmE [Vibrio sp. Ex25],...	223.0	[0..1]	[160..1]
CCME_SHESR - Cytochrome c-type biogenesis protein CcmE OS=Shewanella sp. (strain MR-7) GN=ccmE PE=3 SV=1 CCME_SHESM - Cytochrome c-type biogenesis protein CcmE OS=Shewanella sp. (strain MR-4) GN=ccmE PE=3 SV=1	222.0	[0..1]	[161..1]
gi\|148875622, gi... - gi\|153828916\|ref\|ZP_01981583.1\| cytochrome c-type biogenesis protein CcmE [Vibrio cholerae 623-39], ... gi\|150423117, gi... - gi\|254286826\|ref\|ZP_04961779.1\| cytochrome c-type biogenesis protein CcmE [Vibrio cholerae AM-19226]... gi\|183013120, gi... - gi\|183179709\|ref\|ZP_02957920.1\| cytochrome c-type biogenesis protein CcmE [Vibrio cholerae MZO-3], g... gi\|229607402, gi... - gi\|229607402\|ref\|YP_002878050.1\| cytochrome c-type biogenesis protein CcmE heme chaperone [Vibrio ch... gi\|229519043, gi... - gi\|229519043\|ref\|ZP_04408486.1\| cytochrome c-type biogenesis protein CcmE heme chaperone [Vibrio cho... gi\|229507857, gi... - gi\|229507857\|ref\|ZP_04397362.1\| cytochrome c-type biogenesis protein CcmE heme chaperone [Vibrio cho... CCME_VIBC3 - Cytochrome c-type biogenesis protein CcmE OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classi... CCME_VIBCM - Cytochrome c-type biogenesis protein CcmE OS=Vibrio cholerae serotype O1 (strain M66-2) GN=ccmE PE=3... gi\|75814805, gi\|... - gi\|75814805\|ref\|ZP_00745353.1\| COG2332: Cytochrome c-type biogenesis protein CcmE [Vibrio cholerae V... gi\|121586903, gi... - gi\|121586903\|ref\|ZP_01676683.1\| cytochrome c-type biogenesis protein CcmE [Vibrio cholerae 2740-80],... gi\|153222195, gi... - gi\|153222195\|ref\|ZP_01952974.1\| cytochrome c-type biogenesis protein CcmE [Vibrio cholerae MAK 757],... gi\|126509908, gi... - gi\|153819541\|ref\|ZP_01972208.1\| cytochrome c-type biogenesis protein CcmE [Vibrio cholerae NCTC 8457... gi\|229511907, gi... - gi\|229511907\|ref\|ZP_04401386.1\| cytochrome c-type biogenesis protein CcmE heme chaperone [Vibrio cho... gi\|75829265, gi\|... - gi\|75829265\|ref\|ZP_00758574.1\| COG2332: Cytochrome c-type biogenesis protein CcmE [Vibrio cholerae M... CCME_VIBCH - Cytochrome c-type biogenesis protein CcmE OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor... CCME_VIBCH - Cytochrome c-type biogenesis protein CcmE OS=Vibrio cholerae GN=ccmE PE=3 SV=1	222.0	[0..1]	[160..1]

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Predicted Domain #1

Region A:
Residues: [1-161]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPRRKKRLT LAVALIGGVA AIASLLLYAL NSNLNLFYTP SEIVNGKTDT GVKPEAGQRI  60
   61 RVGGMVTVGS MVRDPNSLHV QFAVHDSLGG EILVTYDDLL PDLFREGQGI VAQGVLGEDG 120
  121 KLAATEVLAK HDENYMPPEV AEAMGQKHEK LDYSQQKSAT Q

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.0
Match:	1j6qA
Description:	Heme chaperone CcmE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.44742917397369	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: