YRC Public Data Repository - Protein Structure Prediction

Protein:	MURB_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	341 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MURB_SHEON.

Description	E-value	Query Range	Subject Range
gi\|42630566 - gi\|42630566\|ref\|ZP_00156105.1\| COG0812: UDP-N-acetylmuramate dehydrogenase [Haemophilus influenzae R... gi\|145639820, gi... - gi\|145639820\|ref\|ZP_01795421.1\| UDP-N-acetylenolpyruvoylglucosamine reductase [Haemophilus influenza...	280.0	[0..5]	[338..2]
gi\|42629731 - gi\|42629731\|ref\|ZP_00155276.1\| COG0812: UDP-N-acetylmuramate dehydrogenase [Haemophilus influenzae R...	279.0	[0..5]	[338..2]
MURB_HAEI8 - UDP-N-acetylenolpyruvoylglucosamine reductase OS=Haemophilus influenzae (strain 86-028NP) GN=murB PE...	278.0	[0..5]	[338..2]
MURB_PASMU - UDP-N-acetylenolpyruvoylglucosamine reductase OS=Pasteurella multocida GN=murB PE=3 SV=1 MURB_PASMU - UDP-N-acetylenolpyruvoylglucosamine reductase OS=Pasteurella multocida (strain Pm70) GN=murB PE=3 SV...	278.0	[0..5]	[337..2]
MURB_HAEIN - UDP-N-acetylenolpyruvoylglucosamine reductase OS=Haemophilus influenzae GN=murB PE=3 SV=1 MURB_HAEIN - UDP-N-acetylenolpyruvoylglucosamine reductase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 111...	278.0	[0..5]	[338..2]
gi\|89110062, gi\|... - gi\|89110062\|ref\|AP_003842.1\| UDP-N-acetylenolpyruvoylglucosamine reductase, FAD-binding [Escherichia... gi\|226838466, gi... - gi\|254039231\|ref\|ZP_04873280.1\| UDP-N-acetylenolpyruvoylglucosamine reductase [Escherichia sp. 1_1_4... gi\|238903033, gi... - gi\|238903033\|ref\|YP_002928829.1\| UDP-N-acetylenolpyruvoylglucosamine reductase, FAD-binding [Escheri... MURB_ECOLI - UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.1.1.158) (UDP-N-acetylmuramate dehydrogenase) - ... gi\|169891272, gi... - gi\|170083437\|ref\|YP_001732757.1\| UDP-N-acetylenolpyruvoylglucosamine reductase, FAD-binding [Escheri... EG11205 - UDP-N-acetylenolpyruvoylglucosamine reductase, FAD-binding / UDP-N-acetylenolpyruvoylglucosamine red... EG11205 - UDP-N-acetylenolpyruvoylglucosamine reductase, FAD-binding / UDP-N-acetylenolpyruvoylglucosamine red...	276.0	[0..3]	[338..1]
gi\|82721436, gi\|... - gi\|82741167\|ref\|ZP_00903894.1\| UDP-N-acetylenolpyruvoylglucosamine reductase [Shewanella sp. W3-18-1... gi\|145566548, gi... - gi\|77813811\|ref\|ZP_00813084.1\| UDP-N-acetylenolpyruvoylglucosamine reductase [Shewanella putrefacien...	276.0	[0..5]	[341..5]
gi\|290456 - gi\|290456\|gb\|AAA24185.1\| UDP-N-acetylpyruvoylglucosamine reductase [Escherichia coli] gi\|83584483, gi\|... - gi\|83584483\|ref\|ZP_00923165.1\| COG0812: UDP-N-acetylmuramate dehydrogenase [Escherichia coli 101-1],... gi\|170022020, gi... - gi\|170022020\|ref\|YP_001726974.1\| UDP-N-acetylenolpyruvoylglucosamine reductase [Escherichia coli ATC... gi\|251787234, gi... - gi\|251787234\|ref\|YP_003001538.1\| hypothetical protein B21_03806 [Escherichia coli BL21], gi\|24237950... gi\|253775394, gi... - gi\|254290668\|ref\|YP_003056416.1\| UDP-N-acetylenolpyruvoylglucosamine reductase [Escherichia coli BL2... gi\|254163918, gi... - gi\|254163918\|ref\|YP_003047026.1\| UDP-N-acetylenolpyruvoylglucosamine reductase [Escherichia coli B s...	275.0	[0..3]	[338..1]
MURB_SHIDS - UDP-N-acetylenolpyruvoylglucosamine reductase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=m...	274.0	[0..3]	[338..1]
gi\|208812779, gi... - gi\|208812779\|ref\|ZP_03254108.1\| UDP-N-acetylenolpyruvoylglucosamine reductase [Escherichia coli O157... gi\|208739222, gi... - gi\|208819099\|ref\|ZP_03259419.1\| UDP-N-acetylenolpyruvoylglucosamine reductase [Escherichia coli O157... gi\|209157887, gi... - gi\|209396487\|ref\|YP_002273492.1\| UDP-N-acetylenolpyruvoylglucosamine reductase [Escherichia coli O15... gi\|13364375, gi\|... - gi\|15834153\|ref\|NP_312926.1\| UDP-N-acetylenolpyruvoylglucosamine reductase [Escherichia coli O157:H7... gi\|217326068, gi... - gi\|217326068\|ref\|ZP_03442152.1\| UDP-N-acetylenolpyruvoylglucosamine reductase [Escherichia coli O157... gi\|168786836, gi... - gi\|189373328\|gb\|EDU91744.1\| UDP-N-acetylenolpyruvoylglucosamine reductase [Escherichia coli O157:H7 ... gi\|168802901, gi... - gi\|189375263\|gb\|EDU93679.1\| UDP-N-acetylenolpyruvoylglucosamine reductase [Escherichia coli O157:H7 ... gi\|195940694 - gi\|195940694\|ref\|ZP_03086076.1\| UDP-N-acetylenolpyruvoylglucosamine reductase [Escherichia coli O157... gi\|208805744, gi... - gi\|208805744\|ref\|ZP_03248081.1\| UDP-N-acetylenolpyruvoylglucosamine reductase [Escherichia coli O157... gi\|189364933, gi... - gi\|189364933\|gb\|EDU83349.1\| UDP-N-acetylenolpyruvoylglucosamine reductase [Escherichia coli O157:H7 ... gi\|189359749, gi... - gi\|189359749\|gb\|EDU78168.1\| UDP-N-acetylenolpyruvoylglucosamine reductase [Escherichia coli O157:H7 ... gi\|168778066, gi... - gi\|187766851\|gb\|EDU30695.1\| UDP-N-acetylenolpyruvoylglucosamine reductase [Escherichia coli O157:H7 ... gi\|168780897, gi... - gi\|189001520\|gb\|EDU70506.1\| UDP-N-acetylenolpyruvoylglucosamine reductase [Escherichia coli O157:H7 ... gi\|168752647, gi... - gi\|188013585\|gb\|EDU51707.1\| UDP-N-acetylenolpyruvoylglucosamine reductase [Escherichia coli O157:H7 ... gi\|168759133, gi... - gi\|189354242\|gb\|EDU72661.1\| UDP-N-acetylenolpyruvoylglucosamine reductase [Escherichia coli O157:H7 ... gi\|12518898, gi\|... - gi\|15804566\|ref\|NP_290607.1\| UDP-N-acetylenolpyruvoylglucosamine reductase [Escherichia coli O157:H7... gi\|209751908, gi... - pir\|\|H86088 UDP-N-acetylenolpyruvoylglucosamine reductase [imported] - Escherichia coli (strain O157... gi\|254595375, gi... - gi\|254795975\|ref\|YP_003080812.1\| UDP-N-acetylenolpyruvoylglucosamine reductase, FAD-binding [Escheri... MURB_ECO57 - UDP-N-acetylenolpyruvoylglucosamine reductase OS=Escherichia coli O157:H7 GN=murB PE=3 SV=1	274.0	[0..3]	[338..1]

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Predicted Domain #1

Region A:
Residues: [1-341]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFPYSLKSF NTFGVTQSCL SLIEVRSKAE LQAICLPLYQ SKQPMLVLGG GSNIVFTDDF  60
   61 NGTVVRVLSK GISVTEDVSY FYLEIEAGEN WHELVEFTLN NHMAGLENLA LIPGTVGAAP 120
  121 IQNIGAYGVE LCDICHWVEY LDLDSGLLLR LSVDECEFSY RESIFKGRLR DKAVITAVGL 180
  181 RLPKTWQPRL AYGPLQSFAA DTVTPRDIFE RVCEVRSEKL PDPHILGNAG SFFKNPIISA 240
  241 AAYVELAQRF PNIVGYAQAN GDVKLAAGWL IEHAGLKGFV LGNAGVHAKQ ALVLVNLGNA 300
  301 TGQDICRLAL HVIARVHDVF GVMLEAEPRI MGLNGETSLH V

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	74.30103
Match:	1mbbA
Description:	OXIDOREDUCTASE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
UDP-N-acetylmuramate dehydrogenase activity	3.31671992605898	bayes_pls_golite062009
catalytic activity	1.27762227752756	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: