YRC Public Data Repository - Protein Structure Prediction

Protein:	TRMA_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	366 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRMA_SHEON.

Description	E-value	Query Range	Subject Range
Y363_BACC1 - Uncharacterized RNA methyltransferase BCE_0363 OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=B...	262.0	[0..2]	[366..86]
gi\|125714480, gi... - gi\|67917419\|ref\|ZP_00511046.1\| tRNA (uracil-5-)-methyltransferase/TrmA [Clostridium thermocellum ATC...	261.0	[0..2]	[365..81]
gi\|52784541, gi\|... - gi\|52784541\|ref\|YP_090370.1\| YefA [Bacillus licheniformis ATCC 14580], gi\|52347043\|gb\|AAU39677.1\| Ye...	260.0	[0..2]	[365..84]
Y687_BACHD - Uncharacterized RNA methyltransferase BH0687 OS=Bacillus halodurans GN=BH0687 PE=3 SV=1 Y687_BACHD - Uncharacterized RNA methyltransferase BH0687 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197...	257.0	[0..2]	[365..85]
gi\|49480082, gi\|... - gi\|49480082\|ref\|YP_034651.1\| RNA methyltransferase [Bacillus thuringiensis serovar konkukian str. 97...	255.0	[0..2]	[363..86]
gi\|51978385, gi\|... - gi\|52144916\|ref\|YP_081914.1\| RNA methyltransferase [Bacillus cereus E33L], gi\|51978385\|gb\|AAU19935.1...	255.0	[0..2]	[363..86]
gi\|89204769, gi\|... - gi\|89204769\|ref\|ZP_01183345.1\| 23S rRNA methyltransferase/RumA [Bacillus weihenstephanensis KBAB4], ...	255.0	[0..2]	[363..86]
Y364_BACCR - Uncharacterized RNA methyltransferase BC_0364 OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2...	255.0	[0..2]	[363..86]
gi\|46113357, gi\|... - gi\|68054113\|ref\|ZP_00538277.1\| 23S rRNA methyltransferase/RumA [Exiguobacterium sibiricum 255-15], g...	255.0	[0..2]	[366..81]
gi\|167640112, gi... - gi\|167640112\|ref\|ZP_02398379.1\| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0193], ... gi\|167634215, gi... - gi\|167634215\|ref\|ZP_02392537.1\| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0442], ... gi\|172081222, gi... - gi\|177653642\|ref\|ZP_02935781.1\| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0174], ... gi\|170688363, gi... - gi\|170688363\|ref\|ZP_02879572.1\| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0465], ... Y333_BACAN - Uncharacterized RNA methyltransferase BA_0333/GBAA_0333/BAS0318 OS=Bacillus anthracis GN=BA_0333 PE=... gi\|190561366, gi... - gi\|190567579\|ref\|ZP_03020492.1\| RNA methyltransferase, TrmA family [Bacillus anthracis Tsiankovskii-... gi\|227007157, gi... - gi\|227812998\|ref\|YP_002813007.1\| RNA methyltransferase, TrmA family [Bacillus anthracis str. CDC 684... gi\|229601940, gi... - gi\|229601940\|ref\|YP_002864948.1\| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0248],... gi\|254686717 - gi\|254686717\|ref\|ZP_05150575.1\| RNA methyltransferase, TrmA family protein [Bacillus anthracis str. ... gi\|254724793 - gi\|254724793\|ref\|ZP_05186576.1\| RNA methyltransferase, TrmA family protein [Bacillus anthracis str. ... gi\|254742321 - gi\|254742321\|ref\|ZP_05200007.1\| RNA methyltransferase, TrmA family protein [Bacillus anthracis str. ... gi\|254756096 - gi\|254756096\|ref\|ZP_05208125.1\| RNA methyltransferase, TrmA family protein [Bacillus anthracis str. ... gi\|30260503, gi\|... - gi\|30260503\|ref\|NP_842880.1\| RNA methyltransferase [Bacillus anthracis str. Ames], gi\|30253871\|gb\|AA... gi\|254761914 - gi\|254761914\|ref\|ZP_05213763.1\| RNA methyltransferase, TrmA family protein [Bacillus anthracis str. ... gi\|65317755, gi\|... - gi\|65317755\|ref\|ZP_00390714.1\| COG2265: SAM-dependent methyltransferases related to tRNA (uracil-5-)... gi\|49183346, gi\|... - gi\|49183346\|ref\|YP_026598.1\| RNA methyltransferase [Bacillus anthracis str. Sterne], gi\|49177273\|gb\|... gi\|47500748, gi\|... - gi\|47525600\|ref\|YP_016949.1\| RNA methyltransferase [Bacillus anthracis str. 'Ames Ancestor'], gi\|475...	254.0	[0..2]	[363..86]

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Predicted Domain #1

Region A:
Residues: [1-366]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLAAMDPTT YDAQLEAKRI KLEQAFAQFE TPSIEVFASD PEHYRMRAEF RVWHEGDDLY  60
   61 YYMFDKALND KVRCDQYLPA STLINEMMAA LIAELKPNPS LRHKLFQVDF LSTLSGEILV 120
  121 SLLYHRQLDD QWRAEAIALK AKLSSQFKVN IIGRARKQKI DLDKDFVVES LQVNDKVFHY 180
  181 KQIENSFTQP NAKVAIKMLE WAIDVTQNSQ GDLLELYCGN GNFSIALAQN FNRVLATELA 240
  241 KPSVDAAQYN IEINGIDNLQ IIRMSAEEFS DAMAKKRSFR RLEGIDLDSY LCNTIFVDPP 300
  301 RAGIDPATLD LVQGYERILY ISCNPDTLKD NLQQLYKTHK VTRFALFDQF PYTDHMETGV 360
  361 LLERIK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.69897
Match:	1uwvA
Description:	Crystal Structure of RumA, the iron-sulfur cluster containing E. coli 23S Ribosomal RNA 5-Methyluridine Methyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
methyltransferase activity	4.64500705012502	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	4.57389022626587	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	3.74830027382001	bayes_pls_golite062009
RNA methyltransferase activity	3.6174490060285	bayes_pls_golite062009
N-methyltransferase activity	3.00112136063228	bayes_pls_golite062009
rRNA methyltransferase activity	2.80578045927127	bayes_pls_golite062009
protein methyltransferase activity	2.74535979387581	bayes_pls_golite062009
transferase activity	2.42370637689376	bayes_pls_golite062009
tRNA methyltransferase activity	2.15176183511624	bayes_pls_golite062009
DNA-methyltransferase activity	1.8182614465692	bayes_pls_golite062009
catalytic activity	1.62377578202456	bayes_pls_golite062009
histone methyltransferase activity	1.42140847541194	bayes_pls_golite062009
arginine N-methyltransferase activity	1.40233857644962	bayes_pls_golite062009
protein-arginine N-methyltransferase activity	1.40233857644962	bayes_pls_golite062009
site-specific DNA-methyltransferase (adenine-specific) activity	0.88654745691593	bayes_pls_golite062009
rRNA (adenine) methyltransferase activity	0.72946673557525	bayes_pls_golite062009
histone-arginine N-methyltransferase activity	0.67380437956274	bayes_pls_golite062009
tRNA (cytosine)-methyltransferase activity	0.661941246551751	bayes_pls_golite062009
tRNA (cytosine-5-)-methyltransferase activity	0.661941246551751	bayes_pls_golite062009
rRNA (adenine-N6,N6-)-dimethyltransferase activity	0.62885479399246	bayes_pls_golite062009
tRNA (adenine)-methyltransferase activity	0.51194141894759	bayes_pls_golite062009
tRNA (adenine-N1-)-methyltransferase activity	0.51194141894759	bayes_pls_golite062009
protein-arginine omega-N monomethyltransferase activity	0.355464145533041	bayes_pls_golite062009
tRNA (guanine) methyltransferase activity	0.355378060639199	bayes_pls_golite062009
rRNA (cytosine) methyltransferase activity	0.346042596102079	bayes_pls_golite062009
O-methyltransferase activity	0.32686871890222	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: