YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|24371797, gi|...
Organism: Shewanella oneidensis MR-1
Length: 368 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24371797, gi|....

Description E-value Query
Range
Subject
Range
desat1-PE, desat... - The gene desat1 is referred to in FlyBase by the symbol Dmel\desat1 (CG5887, FBgn0086687). It is a p...
gi|220945722, gi... - gi|220955424|gb|ACL90255.1| desat1-PA [synthetic construct], gi|220945722|gb|ACL85404.1| desat1-PA [...
383.0 [0..2] [316..66]
gi|23393789 - gi|23393789|gb|AAN31393.1| fatty acyl-CoA desaturase [Musca domestica]
381.0 [0..2] [313..63]
gi|114045684, gi... - gi|114045684|ref|YP_736234.1| Delta-9 acyl-phospholipid desaturase [Shewanella sp. MR-7], gi|1138871...
379.0 [0..1] [368..8]
gi|33335915, gi|... - gi|33335917|gb|AAQ12890.1| Z9-desaturase SFWG4B [Choristoneura parallela], gi|33335915|gb|AAQ12889.1...
378.0 [0..2] [317..36]
gi|5730154 - gi|5730154|emb|CAB52475.1| fatty acid desaturase [Drosophila simulans]
377.0 [0..2] [316..66]
gi|113968521, gi... - gi|82495901|ref|ZP_00881474.1| Stearoyl-CoA 9-desaturase [Shewanella sp. MR-4], gi|82406206|gb|EAP46...
377.0 [0..1] [368..8]
gi|125773565|ref... - GA19204-PA [Drosophila pseudoobscura], GA19204 [Drosophila pseudoobscura pseudoobscura]
gi|125773565, gi... - gi|54637776|gb|EAL27178.1| GA19204 [Drosophila pseudoobscura pseudoobscura], gi|125773565|ref|XP_001...
377.0 [0..2] [314..66]
gi|34538647 - gi|34538647|gb|AAQ74258.1| delta-9 desaturase [Spodoptera littoralis]
376.0 [0..2] [313..36]

Back

Predicted Domain #1
Region A:
Residues: [1-233]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKPPIIWLN VILFSLTFLS AVILVPWYGI VYGYGASEWI AFVVLAFASG LSITAGYHRL  60
   61 WSHKAYKTHP AIRFLYALGG ALALQNSALH WASDHRVHHK HVDDNDKDPY SAKMGFWYSH 120
  121 IGWMLREYQA QRYHDYQNVR DLQNDRIVMW QHKHYLTLVL LMNIGLPALL GWFTGNIAGM 180
  181 LLMAGLLRLV VVHHCTFFIN SLAHVWGCQP YTDKNTARDN GFLAVLTYGE GYH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [234-368]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NFHHIFENDY RNGIKWWHYD PTKWLIKSLS WVGLAKDLRT SPQERIESAR LQMQLLHAKN  60
   61 KVLNLPNADE IIEKIQQEYE LMKQHLLEYY QAQKTLLEAK RKQLVDQQLL QQVEELKTRF 120
  121 LNQQKSWKSL TATYS

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.05
Match: 2h8nA
Description: No description for 2h8nA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle