YRC Public Data Repository - Protein Structure Prediction

Protein:	SELD_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	352 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SELD_SHEON.

Description	E-value	Query Range	Subject Range
SELD_PSEPK - Selenide, water dikinase OS=Pseudomonas putida (strain KT2440) GN=selD PE=3 SV=1	294.0	[0..8]	[351..1]
gi\|67085876, gi\|... - gi\|67156687\|ref\|ZP_00418184.1\| Selenide water dikinase [Azotobacter vinelandii AvOP], gi\|67085876\|gb... gi\|53610895 - ref\|ZP_00342167.1\| COG0709: Selenophosphate synthase [Azotobacter vinelandii]	293.0	[0..8]	[351..1]
gi\|82738408, gi\|... - gi\|82738408\|ref\|ZP_00901241.1\| Selenide water dikinase [Pseudomonas putida F1], gi\|82714488\|gb\|EAP49...	293.0	[0..8]	[351..1]
gi\|75177308, gi\|... - gi\|75177308\|ref\|ZP_00697397.1\| COG0709: Selenophosphate synthase [Shigella boydii BS512], gi\|1877323...	291.0	[0..7]	[350..1]
gi\|104780212, gi... - gi\|95109199\|emb\|CAK13896.1\| selenophosphate synthase [Pseudomonas entomophila L48], gi\|104780212\|ref... gi\|95109199 - gi\|95109199\|emb\|CAK13896.1\| selenophosphate synthase [Pseudomonas entomophila L48]	291.0	[0..8]	[351..1]
gi\|227837381, gi... - gi\|227885808\|ref\|ZP_04003613.1\| selenide, water dikinase [Escherichia coli 83972], gi\|227837381\|gb\|E... gi\|26248021, gi\|... - gi\|26248021\|ref\|NP_754061.1\| selenophosphate synthetase [Escherichia coli CFT073], gi\|26108424\|gb\|AA...	291.0	[0..7]	[350..3]
gi\|209768404, gi... - gi\|25314245\|pir\|\|B85786 selenophosphate synthase [imported] - Escherichia coli (strain O157:H7, sub... gi\|15802175, gi\|... - gi\|15802175\|ref\|NP_288197.1\| selenophosphate synthetase [Escherichia coli O157:H7 EDL933], gi\|125157... gi\|208816588, gi... - gi\|208816588\|ref\|ZP_03257708.1\| selenide, water dikinase [Escherichia coli O157:H7 str. EC4045], gi\|... gi\|208810381, gi... - gi\|208810381\|ref\|ZP_03252257.1\| selenide, water dikinase [Escherichia coli O157:H7 str. EC4206], gi\|... gi\|209158060, gi... - gi\|209396660\|ref\|YP_002270835.1\| selenide, water dikinase [Escherichia coli O157:H7 str. EC4115], gi... gi\|208820701, gi... - gi\|208820701\|ref\|ZP_03261021.1\| selenide, water dikinase [Escherichia coli O157:H7 str. EC4042], gi\|... gi\|218699671, gi... - gi\|218699671\|ref\|YP_002407300.1\| selenophosphate synthetase [Escherichia coli IAI39], gi\|218369657\|e... gi\|217318196, gi... - gi\|217328849\|ref\|ZP_03444930.1\| selenide, water dikinase [Escherichia coli O157:H7 str. TW14588], gi... gi\|254793382, gi... - gi\|254793382\|ref\|YP_003078219.1\| selenophosphate synthase [Escherichia coli O157:H7 str. TW14359], g... SELD_ECO57 - Selenide, water dikinase OS=Escherichia coli O157:H7 GN=selD PE=3 SV=1 SELD_ECOL6 - Selenide, water dikinase OS=Escherichia coli O6 GN=selD PE=3 SV=1 SELD_ECOL6 - Selenide, water dikinase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=selD PE=3... gi\|191171771, gi... - gi\|75241361\|ref\|ZP_00725212.1\| COG0709: Selenophosphate synthase [Escherichia coli F11], gi\|19117177... SELD_SHIDS - Selenide, water dikinase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=selD PE=3 SV=1 SELD_SHIBS - Selenide, water dikinase OS=Shigella boydii serotype 4 (strain Sb227) GN=selD PE=3 SV=1 gi\|189356151, gi... - gi\|189356151\|gb\|EDU74570.1\| selenide, water dikinase [Escherichia coli O157:H7 str. EC4401], gi\|1687... gi\|168749415, gi... - gi\|188016283\|gb\|EDU54405.1\| selenide, water dikinase [Escherichia coli O157:H7 str. EC4113], gi\|1687... gi\|168770727, gi... - gi\|189360379\|gb\|EDU78798.1\| selenide, water dikinase [Escherichia coli O157:H7 str. EC4486], gi\|1687... gi\|189367434, gi... - gi\|189367434\|gb\|EDU85850.1\| selenide, water dikinase [Escherichia coli O157:H7 str. EC4501], gi\|1687... gi\|168782186, gi... - gi\|189000334\|gb\|EDU69320.1\| selenide, water dikinase [Escherichia coli O157:H7 str. EC4076], gi\|1687... gi\|187769373, gi... - gi\|187769373\|gb\|EDU33217.1\| selenide, water dikinase [Escherichia coli O157:H7 str. EC4196], gi\|1687... gi\|15831724, gi\|... - gi\|15831724\|ref\|NP_310497.1\| selenophosphate synthetase [Escherichia coli O157:H7 str. Sakai], gi\|13... gi\|195937450 - gi\|195937450\|ref\|ZP_03082832.1\| selenophosphate synthetase [Escherichia coli O157:H7 str. EC4024] SELD_ECOL5 - Selenide, water dikinase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=selD PE=3 SV=1 gi\|189372046, gi... - gi\|189372046\|gb\|EDU90462.1\| selenide, water dikinase [Escherichia coli O157:H7 str. EC869], gi\|16878...	291.0	[0..7]	[350..1]
gi\|117623935, gi... - gi\|117623935\|ref\|YP_852848.1\| selenophosphate synthetase [Escherichia coli APEC O1], gi\|115513059\|gb... gi\|91210980, gi\|... - gi\|91210980\|ref\|YP_540966.1\| selenophosphate synthetase [Escherichia coli UTI89], gi\|91072554\|gb\|ABE... gi\|226900471, gi... - gi\|237705714\|ref\|ZP_04536195.1\| selenophosphate synthetase [Escherichia sp. 3_2_53FAA], gi\|226900471...	291.0	[0..7]	[350..3]
gi\|170024323, gi... - gi\|170024323\|ref\|YP_001720828.1\| selenophosphate synthetase [Yersinia pseudotuberculosis YPIII], gi\|... SELD_YERPS - Selenide, water dikinase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=selD PE=3 SV=... gi\|186895461, gi... - gi\|186895461\|ref\|YP_001872573.1\| selenophosphate synthetase [Yersinia pseudotuberculosis PB1/+], gi\|... SELD_YERPS - Selenide, water dikinase OS=Yersinia pseudotuberculosis GN=selD PE=3 SV=1 gi\|117673601, gi... - gi\|77629173\|ref\|ZP_00791759.1\| COG0709: Selenophosphate synthase [Yersinia pseudotuberculosis IP 317...	290.0	[0..7]	[351..1]
SELD_YERPE - Selenide, water dikinase OS=Yersinia pestis GN=selD PE=3 SV=1 gi\|166009370, gi... - gi\|166009370\|ref\|ZP_02230268.1\| selenide, water dikinase [Yersinia pestis biovar Antiqua str. E19790... gi\|165939346, gi... - gi\|89102099\|ref\|ZP_01174761.1\| COG0709: Selenophosphate synthase [Yersinia pestis biovar Orientalis ... gi\|166207889, gi... - gi\|166210709\|ref\|ZP_02236744.1\| selenide, water dikinase [Yersinia pestis biovar Antiqua str. B42003... gi\|45441765, gi\|... - gi\|45441765\|ref\|NP_993304.1\| selenophosphate synthetase [Yersinia pestis biovar Microtus str. 91001]... gi\|108779430, gi... - gi\|108807517\|ref\|YP_651433.1\| selenophosphate synthetase [Yersinia pestis Antiqua], gi\|108779430\|gb\|... gi\|167049207, gi... - gi\|167401511\|ref\|ZP_02307008.1\| selenide, water dikinase [Yersinia pestis biovar Antiqua str. UG05-0... gi\|22126045, gi\|... - gi\|22126045\|ref\|NP_669468.1\| selenophosphate synthetase [Yersinia pestis KIM], gi\|21958997\|gb\|AAM857... gi\|229902089, gi... - gi\|229902089\|ref\|ZP_04517210.1\| selenide, water dikinase [Yersinia pestis Nepal516], gi\|229680985\|gb... gi\|166962102, gi... - gi\|167420407\|ref\|ZP_02312160.1\| selenide, water dikinase [Yersinia pestis biovar Orientalis str. MG0... gi\|162421914, gi... - gi\|77634441\|ref\|ZP_00796541.1\| COG0709: Selenophosphate synthase [Yersinia pestis Angola], gi\|162421... gi\|149292326, gi... - gi\|149365913\|ref\|ZP_01887948.1\| selenide, water dikinase [Yersinia pestis CA88-4125], gi\|149292326\|g... gi\|167426566, gi... - gi\|167426566\|ref\|ZP_02318319.1\| selenide, water dikinase [Yersinia pestis biovar Mediaevalis str. K1... gi\|218929264, gi... - gi\|218929264\|ref\|YP_002347139.1\| selenophosphate synthetase [Yersinia pestis CO92], gi\|16122396\|ref\|... gi\|167469877 - gi\|167469877\|ref\|ZP_02334581.1\| selenide, water dikinase [Yersinia pestis FV-1] gi\|165927743, gi... - gi\|165927743\|ref\|ZP_02223575.1\| selenide, water dikinase [Yersinia pestis biovar Orientalis str. F19... gi\|229702312, gi... - gi\|229894839\|ref\|ZP_04510019.1\| Selenide,water dikinase [Yersinia pestis Pestoides A], gi\|229702312\|... gi\|229693920, gi... - gi\|229897583\|ref\|ZP_04512739.1\| selenide, water dikinase [Yersinia pestis biovar Orientalis str. PEX... gi\|229688794, gi... - gi\|229898228\|ref\|ZP_04513376.1\| selenide, water dikinase [Yersinia pestis biovar Orientalis str. Ind...	290.0	[0..7]	[351..1]

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Predicted Domain #1

Region A:
Residues: [1-352]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNSTLPSTD SIKLTEYSHG AGCGCKISPK VLTTILASQL PVFTDPNLLV GNQSRDDAAV  60
   61 YKLNEEVGII STTDFFMPIV DDPFTFGRIA ATNAISDIYA MGGTPMMAIA ILGWPINKLP 120
  121 AEIAQQVVDG GRQACMEAGI MLAGGHSIDA PEPIFGLAVT GQIALTDLKQ NDTAKAGDRL 180
  181 YLTKPIGIGI LTTAQKQKKL KDEDSHIAVN AMCQLNSIGA QIAKINGVNA LTDVTGFGLA 240
  241 GHLLEMCQGA KLTAKLKLDA VPLLPRALDY LAQGCVPGGT HRNYDSYGEH LPELTDHQKA 300
  301 ILCDPQTSGG LLVAVSSEAE AELVALLNAN QIEPICIGSL EAPTTATNVV LC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.09691
Match:	1cliA
Description:	Aminoimidazole ribonucleotide synthetase (PurM) N-terminal domain; Aminoimidazole ribonucleotide synthetase (PurM) C-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits