YRC Public Data Repository - Protein Structure Prediction

Protein:	SELU_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	376 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SELU_SHEON.

Description	E-value	Query Range	Subject Range
SELU_PSEU2 - tRNA 2-selenouridine synthase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=selU PE=3 SV=1	426.0	[0..9]	[367..6]
SELU_PSE14 - tRNA 2-selenouridine synthase OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) GN=...	425.0	[0..9]	[367..6]
SELU_PSESM - tRNA 2-selenouridine synthase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=selU PE=3 SV=1 SELU_PSESM - tRNA 2-selenouridine synthase OS=Pseudomonas syringae pv. tomato GN=selU PE=3 SV=1	420.0	[0..9]	[366..6]
SELU_PSEP1 - tRNA 2-selenouridine synthase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=selU PE=3 SV=1	408.0	[0..7]	[365..4]
SELU_PSEPK - tRNA 2-selenouridine synthase OS=Pseudomonas putida (strain KT2440) GN=selU PE=3 SV=1	408.0	[0..7]	[365..4]
SELU_PSEE4 - tRNA 2-selenouridine synthase OS=Pseudomonas entomophila (strain L48) GN=selU PE=3 SV=1 gi\|95109198 - gi\|95109198\|emb\|CAK13895.1\| conserved hypothetical protein [Pseudomonas entomophila L48]	405.0	[0..7]	[365..4]
SELU_PSEPF - tRNA 2-selenouridine synthase OS=Pseudomonas fluorescens (strain Pf0-1) GN=selU PE=3 SV=1	402.0	[0..5]	[365..2]
SELU_PSEAE - tRNA 2-selenouridine synthase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / L... gi\|126166673, gi... - gi\|84321606\|ref\|ZP_00969961.1\| COG2603: Predicted ATPase [Pseudomonas aeruginosa C3719], gi\|25423474... gi\|107101074 - gi\|107101074\|ref\|ZP_01364992.1\| hypothetical protein PaerPA_01002105 [Pseudomonas aeruginosa PACS2] SELU_PSEAE - tRNA 2-selenouridine synthase OS=Pseudomonas aeruginosa GN=selU PE=3 SV=1 gi\|126193367, gi... - gi\|84327962\|ref\|ZP_00975973.1\| COG2603: Predicted ATPase [Pseudomonas aeruginosa 2192], gi\|254239989... SELU_PSEAB - tRNA 2-selenouridine synthase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=selU PE=3 SV=1	401.0	[0..7]	[365..4]
gi\|53610894, gi\|... - gi\|67156688\|ref\|ZP_00418185.1\| Rhodanese-like [Azotobacter vinelandii AvOP], ref\|ZP_00342166.1\| COG2... SELU_AZOVD - tRNA 2-selenouridine synthase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=selU PE=3 SV=...	400.0	[0..7]	[364..4]
SELU_PSEA7 - tRNA 2-selenouridine synthase OS=Pseudomonas aeruginosa (strain PA7) GN=selU PE=3 SV=1	397.0	[0..7]	[365..4]

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Predicted Domain #1

Region A:
Residues: [1-268]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTTLIPAQQ YRDIFVAGKP LIDLRAPIEF NRGAFPSSVN LPLMVDKERE KVGTCYKQQG  60
   61 QQAAIALGHS LVHGAVKQQR IDAWLGFLAA QPEAYLYCFR GGLRSQLTQQ WLKEAGATVP 120
  121 YVQGGYKGMR QYLIGVIETT PSQQPLLSLS GMTGSGKTDF LIQRKEAVDL EGIANHRGSS 180
  181 FGKNIDPQPT QINFENQLAI ALLRHQQDNH SCLLLEDESF LIGRSALPQS FYNAMQAADI 240
  241 LVLEEADDIR LNRLLDEYVH KMHQGFVE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.30103
Match:	1yt8A
Description:	Crystal Structure of Thiosulfate sulfurtransferase from Pseudomonas aeruginosa
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
thiosulfate sulfurtransferase activity	3.4060283973149	bayes_pls_golite062009
sulfurtransferase activity	2.00214292806095	bayes_pls_golite062009
transferase activity, transferring sulfur-containing groups	1.49017617674976	bayes_pls_golite062009
catalytic activity	1.05774816707958	bayes_pls_golite062009
transferase activity	0.503171603133473	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [269-376]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RLGIEAGFNA FSQYLLQSLT SIRKRLGGKQ YQELQDTMQQ ALSQQLNQNQ TSQHLAWINL  60
   61 LLQKYYDPMY EYQLEKKAHR VLFRGNHQAM HEWLDNLSQD SLSQENLG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: