YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24345472, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	235 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24345472, gi|....

Description	E-value	Query Range	Subject Range
gi\|89202896, gi\|... - gi\|89202896\|ref\|ZP_01181601.1\| regulatory protein GntR, HTH:UbiC transcription regulator-associated ...	191.0	[0..4]	[235..10]
gi\|49478510, gi\|... - gi\|49478510\|ref\|YP_038113.1\| GntR family transcriptional regulator [Bacillus thuringiensis serovar k... gi\|52141439, gi\|... - gi\|52141439\|ref\|YP_085390.1\| GntR family transcriptional regulator [Bacillus cereus E33L], gi\|519749... gi\|47504713, gi\|... - gi\|47529565\|ref\|YP_020914.1\| GntR family transcriptional regulator [Bacillus anthracis str. 'Ames An... gi\|49186961, gi\|... - gi\|49186961\|ref\|YP_030213.1\| GntR family transcriptional regulator [Bacillus anthracis str. Sterne],... gi\|47565935, gi\|... - gi\|47565935\|ref\|ZP_00236974.1\| transcriptional regulator, GntR family [Bacillus cereus G9241], gi\|47... gi\|30258774, gi\|... - gi\|30264129\|ref\|NP_846506.1\| GntR family transcriptional regulator [Bacillus anthracis str. Ames], g... gi\|254721656 - gi\|254721656\|ref\|ZP_05183445.1\| GntR family transcriptional regulator [Bacillus anthracis str. A1055... gi\|254683821 - gi\|254683821\|ref\|ZP_05147681.1\| GntR family transcriptional regulator [Bacillus anthracis str. CNEVA... gi\|254744057 - gi\|254744057\|ref\|ZP_05201740.1\| GntR family transcriptional regulator [Bacillus anthracis str. Kruge... gi\|254736167 - gi\|254736167\|ref\|ZP_05193873.1\| GntR family transcriptional regulator [Bacillus anthracis str. Weste... gi\|254758146 - gi\|254758146\|ref\|ZP_05210173.1\| GntR family transcriptional regulator [Bacillus anthracis str. Austr... gi\|254754164 - gi\|254754164\|ref\|ZP_05206199.1\| GntR family transcriptional regulator [Bacillus anthracis str. Vollu...	190.0	[0..4]	[235..10]
gi\|30022140, gi\|... - gi\|30022140\|ref\|NP_833771.1\| GntR family transcriptional regulator [Bacillus cereus ATCC 14579], gi\|...	189.0	[0..4]	[235..12]
gi\|163863991, gi... - gi\|89206714\|ref\|ZP_01185268.1\| regulatory protein GntR, HTH:UbiC transcription regulator-associated ...	187.0	[0..4]	[235..10]
gi\|42739095, gi\|... - gi\|42783167\|ref\|NP_980414.1\| GntR family transcriptional regulator [Bacillus cereus ATCC 10987], gi\|... gi\|118418482, gi... - gi\|118479257\|ref\|YP_896408.1\| GntR family transcriptional regulator [Bacillus thuringiensis str. Al ...	186.0	[0..4]	[235..15]
gi\|10173032, gi\|... - gi\|15612982\|ref\|NP_241285.1\| GntR family transcriptional regulator [Bacillus halodurans C-125], gi\|1... gi\|25298828 - pir\|\|C83702 transcription regulator (GntR family) BH0419 [imported] - Bacillus halodurans (strain C-...	183.0	[0..4]	[233..9]
gi\|55736912 - gb\|AAV60554.1\| transcription regulator GntR family [Streptococcus thermophilus LMG 18311] gi\|55820927, gi\|... - gi\|55820927\|ref\|YP_139369.1\| GntR family transcriptional regulator [Streptococcus thermophilus LMG 1...	182.0	[0..4]	[230..3]
gi\|56380652, gi\|... - gi\|56420810\|ref\|YP_148128.1\| GntR family transcriptional regulator [Geobacillus kaustophilus HTA426]...	182.0	[0..4]	[233..9]
gi\|55738834, gi\|... - gi\|55822849\|ref\|YP_141290.1\| GntR family transcriptional regulator [Streptococcus thermophilus CNRZ1... gi\|55738834 - gb\|AAV62475.1\| transcription regulator GntR family [Streptococcus thermophilus CNRZ1066]	182.0	[0..4]	[230..3]
gi\|116627715, gi... - gi\|62526914\|ref\|ZP_00388224.1\| COG2188: Transcriptional regulators [Streptococcus thermophilus LMD-9...	182.0	[0..4]	[230..3]

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Predicted Domain #1

Region A:
Residues: [1-69]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATPKFAEIK QYITGCIESG EWEENARVPS ENQLAELFVC SRMTARRALT ELTDNGVLER  60
   61 SQGLGTFVA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.30103
Match:	2du9A
Description:	No description for 2du9A was found.

Predicted Domain #2

Region A:
Residues: [70-235]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRKSQSSMLA IRNIADEIKD RGHGYSVQQL ALEQVNATAP IAIALALDVG SPVFHSILVH  60
   61 CEQGVPLQVE ERYVNPAFAP DYLVQDFSEQ TPHEYLSQVA PLTEAHHTIE AIIASSELQQ 120
  121 RLAIPATEPC LQISRRTWSR QGVVSFAKLV HPGSRFKLGG HLTFNK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.154902
Match:	2pkhA
Description:	No description for 2pkhA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits