YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24345433, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	177 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24345433, gi|....

Description	E-value	Query Range	Subject Range
gi\|160873196, gi... - gi\|160873196\|ref\|YP_001552512.1\| molybdenum cofactor biosynthesis protein [Shewanella baltica OS195]... gi\|151363238, gi... - gi\|152998620\|ref\|YP_001364301.1\| molybdenum cofactor biosynthesis protein [Shewanella baltica OS185]... gi\|217971285, gi... - gi\|217971285\|ref\|YP_002356036.1\| molybdenum cofactor biosynthesis protein [Shewanella baltica OS223]... gi\|68541379, gi\|... - gi\|68541379\|ref\|ZP_00581124.1\| Molybdenum cofactor biosynthesis protein [Shewanella baltica OS155], ... gi\|82740951, gi\|... - gi\|82740951\|ref\|ZP_00903683.1\| Molybdopterin binding domain [Shewanella sp. W3-18-1], gi\|82721718\|gb... gi\|113883097, gi... - gi\|82495795\|ref\|ZP_00881368.1\| Molybdopterin binding domain [Shewanella sp. MR-4], gi\|82406100\|gb\|EA... gi\|124510382, gi... - gi\|124546143\|ref\|ZP_01705259.1\| molybdenum cofactor synthesis domain [Shewanella putrefaciens 200], ... gi\|78689060, gi\|... - gi\|78689060\|ref\|ZP_00853725.1\| Molybdopterin binding domain [Shewanella sp. MR-7], gi\|78511460\|gb\|EA... gi\|78506773, gi\|... - gi\|78685395\|ref\|ZP_00850173.1\| Molybdopterin binding domain [Shewanella sp. ANA-3], gi\|78506773\|gb\|E... gi\|146291164, gi... - gi\|77814403\|ref\|ZP_00813663.1\| Molybdenum cofactor biosynthesis protein [Shewanella putrefaciens CN-...	194.0	[0..1]	[177..1]
gi\|54302319, gi\|... - gi\|54302319\|ref\|YP_132312.1\| molybdenum cofactor biosynthesis protein [Photobacterium profundum SS9]...	194.0	[0..1]	[177..1]
gi\|90414003, gi\|... - gi\|90414003\|ref\|ZP_01221987.1\| putative molybdenum cofactor biosynthesisprotein Mog [Photobacterium ...	193.0	[0..1]	[177..1]
gi\|69156562, gi\|... - gi\|91795033\|ref\|YP_564684.1\| molybdenum cofactor biosynthesis protein [Shewanella denitrificans OS21...	191.0	[0..1]	[177..1]
gi\|78360956, gi\|... - gi\|78367013\|ref\|ZP_00837288.1\| Molybdenum cofactor biosynthesis protein [Shewanella sp. PV-4], gi\|78...	188.0	[0..1]	[177..1]
gi\|59481996, gi\|... - gi\|59713748\|ref\|YP_206523.1\| molybdenum cofactor biosynthesis protein [Vibrio fischeri ES114], gi\|59... gi\|197336829, gi... - gi\|197336829\|ref\|YP_002158127.1\| molybdenum cofactor biosynthesis protein [Vibrio fischeri MJ11], gi...	187.0	[0..2]	[177..3]
gi\|90577220, gi\|... - gi\|90577220\|ref\|ZP_01233031.1\| molybdenum cofactor biosynthesis protein [Vibrio angustum S14], gi\|90...	187.0	[0..1]	[177..1]
gi\|89051960, gi\|... - gi\|89072428\|ref\|ZP_01159007.1\| putative molybdenum cofactor biosynthesisprotein Mog [Photobacterium ...	187.0	[0..1]	[177..1]
gi\|69163967, gi\|... - gi\|69952754\|ref\|ZP_00640121.1\| Molybdenum cofactor biosynthesis protein [Shewanella frigidimarina NC...	186.0	[0..1]	[177..1]
gi\|88192882, gi\|... - gi\|93279763\|pdb\|2FUW\|F Chain F, Crystal Structure Of Molybdenum Cofactor Biosynthesis Protein Mog Fr...	185.0	[0..2]	[177..2]

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Predicted Domain #1

Region A:
Residues: [1-177]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKAKIGIVT VSDRASAGIY EDISGKAIID TLNDYLTSEW EPIYQVIPDE QDVIETTLIK  60
   61 MADEQDCCLI VTTGGTGPAK RDVTPEATEA VCDRMMPGFG ELMRAESLKF VPTAILSRQT 120
  121 AGLRGDSLIV NLPGKPKSIR ECLDAVFPAI PYCIDLMEGP YLECNEAVIK PFRPKAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.69897
Match:	2f7wA
Description:	Crystal structure of Molybdenum cofactor biosynthesis protein Mog from Shewanella oneidensis
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.55991563183069	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: