YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24371660, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	348 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24371660, gi|....

Description	E-value	Query Range	Subject Range
gi\|91203275 - gi\|91203275\|emb\|CAJ72914.1\| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis]	252.0	[0..2]	[346..152]
gi\|45358866, gi\|... - gi\|45358866\|ref\|NP_988423.1\| sensory transduction histidine kinase [Methanococcus maripaludis S2], g...	248.0	[0..30]	[345..294]
gi\|68186676, gi\|... - gi\|91772668\|ref\|YP_565360.1\| PAS/PAC sensor signal transduction histidine kinase [Methanococcoides b...	242.0	[0..93]	[348..191]
gi\|166853488, gi... - gi\|167039248\|ref\|YP_001662233.1\| integral membrane sensor signal transduction histidine kinase [Ther... gi\|241904558, gi... - gi\|241904558\|ref\|ZP_04789245.1\| histidine kinase [Thermoanaerobacter brockii subsp. finnii Ako-1], g... gi\|76588655, gi\|... - gi\|76795887\|ref\|ZP_00778257.1\| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...	241.0	[0..17]	[341..136]
gi\|21228280, gi\|... - gi\|21228280\|ref\|NP_634202.1\| two component system histidine kinase [Methanosarcina mazei Go1], gi\|20...	238.0	[0..90]	[347..519]
gi\|20092217, gi\|... - gi\|20092217\|ref\|NP_618292.1\| sensory transduction histidine kinase [Methanosarcina acetivorans C2A],...	238.0	[0..65]	[345..461]
gi\|20808918 - gi\|20808918\|ref\|NP_624089.1\| Sensory transduction histidine kinase [Thermoanaerobacter tengcongensis... gi\|20808918, gi\|... - gi\|20808918\|ref\|NP_624089.1\| sensory transduction histidine kinase [Thermoanaerobacter tengcongensis...	238.0	[0..15]	[345..133]
gi\|77995587, gi\|... - gi\|78043472\|ref\|YP_360244.1\| sensor histidine kinase [Carboxydothermus hydrogenoformans Z-2901], gi\|...	236.0	[0..6]	[348..125]
gi\|73668585, gi\|... - gi\|73668585\|ref\|YP_304600.1\| sensory transduction histidine kinase [Methanosarcina barkeri str. Fusa...	236.0	[0..102]	[346..478]

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Predicted Domain #1

Region A:
Residues: [1-99]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTFANTASIN HYWRTHPALF TAMLLVVVLI TSYFIDVFSG SAIAVLLILQ LAVVVVALQC  60
   61 SANYAYFVAV FGAVSFNFLF TAPRYSLQML NVEDIVNLT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [100-348]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VFLLAALTSS KLAKHYRRQQ DALEQAQLRN SILLSVSHDL RTPLATIIGT LTTLKEYQPK  60
   61 LSPAQTEELI DSAAAESHRL HQYIENLLQA NKLQHGALKF SLDEANIREV LQRTIARFQT 120
  121 EQPRIQIQSE PELPSLMICS SLIEQAIFNV LDNALHYSPA TQPVTVSLYR HQHMLRIDIQ 180
  181 DQGKGIAPSQ TGAIFELFYR QHPTTDGGAG LGLPVAKGII TAHNGTISAE KVAHGSLIRI 240
  241 ALPITKESA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.39794
Match:	2c2aA
Description:	Structure of the entire cytoplasmic portion of a sensor histidine kinase protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits