YRC Public Data Repository - Protein Structure Prediction

Protein:	GPDA_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	338 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GPDA_SHEON.

Description	E-value	Query Range	Subject Range
gi\|77810683, gi\|... - gi\|77814412\|ref\|ZP_00813672.1\| Glycerol-3-phosphate dehydrogenase (NAD(P)+) [Shewanella putrefaciens... gi\|82744058, gi\|... - gi\|82744058\|ref\|ZP_00906660.1\| Glycerol-3-phosphate dehydrogenase (NAD(P)+) [Shewanella sp. W3-18-1]...	265.0	[0..1]	[338..28]
GPDA_PHOLL - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Photorhabdus luminescens subsp. laumondii (strain DS... GPDA_PHOLL - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Photorhabdus luminescens subsp. laumondii GN=gpsA PE...	262.0	[0..1]	[337..1]
gi\|167468385 - gi\|167468385\|ref\|ZP_02333089.1\| glycerol-3-phosphate dehydrogenase (NAD(P)+) [Yersinia pestis FV-1] gi\|167054371, gi... - gi\|167426682\|ref\|ZP_02318435.1\| glycerol-3-phosphate dehydrogenase [NAD(P)+] [Yersinia pestis biovar... GPDA_YERPB - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Yersinia pseudotuberculosis serotype IB (strain PB1/... GPDA_YERPY - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Yersinia pseudotuberculosis serotype O:3 (strain YPI... gi\|165922034, gi... - gi\|165926174\|ref\|ZP_02222006.1\| glycerol-3-phosphate dehydrogenase [NAD(P)+] [Yersinia pestis biovar... gi\|166213685, gi... - gi\|166213685\|ref\|ZP_02239720.1\| glycerol-3-phosphate dehydrogenase [NAD(P)+] [Yersinia pestis biovar... gi\|165989636, gi... - gi\|166011490\|ref\|ZP_02232388.1\| glycerol-3-phosphate dehydrogenase [NAD(P)+] [Yersinia pestis biovar... gi\|167418927, gi... - gi\|167418927\|ref\|ZP_02310680.1\| glycerol-3-phosphate dehydrogenase [NAD(P)+] [Yersinia pestis biovar... gi\|167051015, gi... - gi\|167398511\|ref\|ZP_02304035.1\| glycerol-3-phosphate dehydrogenase [NAD(P)+] [Yersinia pestis biovar... gi\|165936241, gi... - gi\|89103918\|ref\|ZP_01176478.1\| COG0240: Glycerol-3-phosphate dehydrogenase [Yersinia pestis biovar O... GPDA_YERPA - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=gpsA... GPDA_YERPN - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=gps... gi\|16120419, gi\|... - gi\|218927287\|ref\|YP_002345162.1\| NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Yersinia pest... gi\|229836181, gi... - gi\|229836181\|ref\|ZP_04456349.1\| glycerol-3-phosphate dehydrogenase (NAD+) [Yersinia pestis Pestoides... gi\|229839917, gi... - gi\|229839917\|ref\|ZP_04460076.1\| glycerol-3-phosphate dehydrogenase (NAD+) [Yersinia pestis biovar Or... gi\|229690309, gi... - gi\|229841999\|ref\|ZP_04462154.1\| glycerol-3-phosphate dehydrogenase (NAD+) [Yersinia pestis biovar Or... gi\|150260870, gi... - gi\|150260870\|ref\|ZP_01917598.1\| glycerol-3-phosphate dehydrogenase [Yersinia pestis CA88-4125], gi\|1... GPDA_YERPP - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Yersinia pestis (strain Pestoides F) GN=gpsA PE=3 SV... GPDA_YERPS - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Yersinia pseudotuberculosis GN=gpsA PE=3 SV=1 GPDA_YERPG - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Yersinia pestis bv. Antiqua (strain Angola) GN=gpsA ... GPDA_YERP3 - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Yersinia pseudotuberculosis serotype O:1b (strain IP... gi\|21956735, gi\|... - gi\|22123994\|ref\|NP_667417.1\| NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Yersinia pestis K... GPDA_YERPE - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Yersinia pestis GN=gpsA PE=3 SV=1 GPDA_YERPS - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Yersinia pseudotuberculosis serotype I (strain IP329... gi\|45439932, gi\|... - gi\|45439932\|ref\|NP_991471.1\| NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Yersinia pestis b...	260.0	[0..2]	[334..3]
gi\|238715079, gi... - gi\|77958478\|ref\|ZP_00822511.1\| COG0240: Glycerol-3-phosphate dehydrogenase [Yersinia bercovieri ATCC...	258.0	[0..1]	[334..1]
GPDA_PECAS - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC... GPDA_ERWCT - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Erwinia carotovora subsp. atroseptica GN=gpsA PE=3 S...	258.0	[0..2]	[335..3]
gi\|238794391, gi... - gi\|77977373\|ref\|ZP_00832823.1\| COG0240: Glycerol-3-phosphate dehydrogenase [Yersinia intermedia ATCC...	257.0	[0..1]	[334..1]
gi\|77972955, gi\|... - gi\|77972955\|ref\|ZP_00828509.1\| COG0240: Glycerol-3-phosphate dehydrogenase [Yersinia frederiksenii A...	257.0	[0..1]	[334..1]
GPDA_SHESR - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Shewanella sp. (strain MR-7) GN=gpsA PE=3 SV=1 GPDA_SHESA - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Shewanella sp. (strain ANA-3) GN=gpsA PE=3 SV=1 GPDA_SHESM - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Shewanella sp. (strain MR-4) GN=gpsA PE=3 SV=1	257.0	[0..1]	[338..1]
GPDA_LEPIC - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira interrogans serogroup Icterohaemorrhagiae... GPDA_LEPIC - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira interrogans serogroup Icterohaemorrhagiae...	256.0	[0..5]	[334..1]
GPDA_LEPIN - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira interrogans serogroup Icterohaemorrhagiae... GPDA_LEPIN - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira interrogans GN=gpsA PE=3 SV=1	256.0	[0..5]	[334..1]

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Predicted Domain #1

Region A:
Residues: [1-338]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNSADITVL GAGSYGTALA ISLASNGHKT LLWGHDPAHM QTLAEDKCNQ AFLPGIAFPE  60
   61 CLHIEADLAK ALAASNNVLV VVPSHVFGTV LAQAKPLLRQ DARIVWATKG LEPETGRLLQ 120
  121 DVARDVLGEQ YPLAVLSGPT FAKELAMGLP TAISVAGTCP QFTAELVELL HSPKRLRVYA 180
  181 NDDFIGLQLG GAVKNVIAIG AGMSDGIGFG ANARTALITR GLVELTRLGE ALGASTATFM 240
  241 GMAGLGDLVL TCTDNQSRNR RFGLALGKGC DVDTAQVEIG QVVEGYRNTK EVFTLAKRLG 300
  301 VEMPITEQIY QVLYQGKSPV DAAKELLGRE KKSETPTQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.045757
Match:	1z82A
Description:	Crystal structure of glycerol-3-phosphate dehydrogenase (TM0378) from THERMOTOGA MARITIMA at 2.00 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits