YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24345412, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	144 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24345412, gi|....

Description	E-value	Query Range	Subject Range
gi\|78685378, gi\|... - gi\|78685378\|ref\|ZP_00850156.1\| Rhodanese-like [Shewanella sp. ANA-3], gi\|78506756\|gb\|EAP20271.1\| Rho...	161.0	[0..1]	[144..15]
gi\|82406079, gi\|... - gi\|82495774\|ref\|ZP_00881347.1\| Rhodanese-like [Shewanella sp. MR-4], gi\|82406079\|gb\|EAP46746.1\| Rhod...	160.0	[0..1]	[144..1]
gi\|78367031, gi\|... - gi\|78367031\|ref\|ZP_00837306.1\| Rhodanese-like [Shewanella sp. PV-4], gi\|78360974\|gb\|EAP02803.1\| Rhod...	159.0	[0..1]	[144..27]
gi\|113886999, gi... - gi\|114045557\|ref\|YP_736107.1\| rhodanese domain-containing protein [Shewanella sp. MR-7], gi\|11388699...	158.0	[0..1]	[144..1]
gi\|69953605, gi\|... - gi\|69953605\|ref\|ZP_00640680.1\| Rhodanese-like [Shewanella frigidimarina NCIMB 400], gi\|69163404\|gb\|E...	158.0	[0..1]	[144..1]
gi\|120600819, gi... - gi\|120600819\|ref\|YP_965393.1\| rhodanese domain-containing protein [Shewanella sp. W3-18-1], gi\|12056... gi\|146291152, gi... - gi\|77814414\|ref\|ZP_00813674.1\| Rhodanese-like [Shewanella putrefaciens CN-32], gi\|77810685\|gb\|EAO950...	154.0	[0..1]	[144..1]
gi\|124510393, gi... - gi\|124546154\|ref\|ZP_01705270.1\| Rhodanese-like [Shewanella putrefaciens 200], gi\|124510393\|gb\|EAY544... gi\|82718589, gi\|... - gi\|82744056\|ref\|ZP_00906658.1\| Rhodanese-like [Shewanella sp. W3-18-1], gi\|82718589\|gb\|EAP53553.1\| R...	152.0	[0..1]	[144..19]
gi\|238783973, gi... - gi\|77958475\|ref\|ZP_00822508.1\| COG0607: Rhodanese-related sulfurtransferase [Yersinia bercovieri ATC...	152.0	[0..1]	[143..2]
gi\|91717044, gi\|... - gi\|91795042\|ref\|YP_564693.1\| rhodanese-like protein [Shewanella denitrificans OS217], gi\|91717044\|gb...	151.0	[0..1]	[144..1]
gi\|16762607 - gi\|16762607\|ref\|NP_458224.1\| putative secreted protein [Salmonella enterica subsp. enterica serovar ... gi\|213999709 - gi\|213999709\|ref\|ZP_03410444.1\| putative secreted protein [Salmonella enterica subsp. enterica serov... gi\|224470031, gi... - gi\|224585503\|ref\|YP_002639302.1\| putative secreted protein [Salmonella enterica subsp. enterica sero... gi\|213609369 - gi\|213609369\|ref\|ZP_03369195.1\| putative secreted protein [Salmonella enterica subsp. enterica serov... gi\|213647902 - gi\|213647902\|ref\|ZP_03377955.1\| putative secreted protein [Salmonella enterica subsp. enterica serov... gi\|213852182 - gi\|213852182\|ref\|ZP_03381714.1\| putative secreted protein [Salmonella enterica subsp. enterica serov... gi\|213974755 - gi\|213974755\|ref\|ZP_03402014.1\| putative secreted protein [Salmonella enterica subsp. enterica serov... gi\|213023082 - gi\|213023082\|ref\|ZP_03337529.1\| putative secreted protein [Salmonella enterica subsp. enterica serov... gi\|213163817 - gi\|213163817\|ref\|ZP_03349527.1\| putative secreted protein [Salmonella enterica subsp. enterica serov... gi\|213418819 - gi\|213418819\|ref\|ZP_03351885.1\| putative secreted protein [Salmonella enterica subsp. enterica serov... gi\|213427152 - gi\|213427152\|ref\|ZP_03359902.1\| putative secreted protein [Salmonella enterica subsp. enterica serov... gi\|238910262 - gi\|238910262\|ref\|ZP_04654099.1\| putative secreted protein [Salmonella enterica subsp. enterica serov... gi\|16766988, gi\|... - gi\|16766988\|ref\|NP_462603.1\| putative rhodanese-like sulfurtransferase [Salmonella typhimurium LT2],... gi\|29144096, gi\|... - gi\|29144096\|ref\|NP_807438.1\| putative secreted protein [Salmonella enterica subsp. enterica serovar ... gi\|16504912, gi\|... - gi\|25300044\|pir\|\|AG0974 probable secreted protein STY4092 [imported] - Salmonella enterica subsp. en... gi\|205325595, gi... - gi\|205325595\|gb\|EDZ13434.1\| rhodanese domain protein [Salmonella enterica subsp. enterica serovar Sa... gi\|167994323, gi... - gi\|205327796\|gb\|EDZ14560.1\| rhodanese domain protein [Salmonella enterica subsp. enterica serovar 4,... gi\|205333229, gi... - gi\|205333229\|gb\|EDZ19993.1\| rhodanese domain protein [Salmonella enterica subsp. enterica serovar Ke... gi\|168235307, gi... - gi\|197291425\|gb\|EDY30777.1\| rhodanese domain protein [Salmonella enterica subsp. enterica serovar Sc... gi\|161505762, gi... - gi\|161505762\|ref\|YP_001572874.1\| hypothetical protein SARI_03938 [Salmonella enterica subsp. arizona... gi\|161616781, gi... - gi\|161616781\|ref\|YP_001590746.1\| hypothetical protein SPAB_04600 [Salmonella enterica subsp. enteric... gi\|62182196, gi\|... - gi\|62182196\|ref\|YP_218613.1\| putative rhodanese-related sulfurtransferase [Salmonella enterica subsp... gi\|200388040, gi... - gi\|200388040\|ref\|ZP_03214652.1\| rhodanese domain protein [Salmonella enterica subsp. enterica serova... gi\|56129850, gi\|... - gi\|56415593\|ref\|YP_152668.1\| putative secreted protein [Salmonella enterica subsp. enterica serovar ... gi\|204928842, gi... - gi\|204928842\|ref\|ZP_03220041.1\| rhodanese domain protein [Salmonella enterica subsp. enterica serova... gi\|205354694, gi... - gi\|205354694\|ref\|YP_002228495.1\| putative secreted protein [Salmonella enterica subsp. enterica sero... gi\|207858940, gi... - gi\|207858940\|ref\|YP_002245591.1\| putative secreted protein [Salmonella enterica subsp. enterica sero... gi\|197249828, gi... - gi\|197249828\|ref\|YP_002148636.1\| rhodanese domain protein [Salmonella enterica subsp. enterica serov... gi\|197263708, gi... - gi\|197263708\|ref\|ZP_03163782.1\| rhodanese domain protein [Salmonella enterica subsp. enterica serova... gi\|197095997, gi... - gi\|197364520\|ref\|YP_002144157.1\| putative secreted protein [Salmonella enterica subsp. enterica sero... gi\|197939713, gi... - gi\|198245197\|ref\|YP_002217665.1\| rhodanese domain protein [Salmonella enterica subsp. enterica serov... gi\|194403698, gi... - gi\|194445035\|ref\|YP_002042953.1\| rhodanese domain protein [Salmonella enterica subsp. enterica serov... gi\|194451332, gi... - gi\|194451332\|ref\|YP_002047734.1\| rhodanese domain protein [Salmonella enterica subsp. enterica serov... gi\|194456959, gi... - gi\|194470595\|ref\|ZP_03076579.1\| rhodanese domain protein [Salmonella enterica subsp. enterica serova... gi\|194734466, gi... - gi\|194734466\|ref\|YP_002116638.1\| rhodanese domain protein [Salmonella enterica subsp. enterica serov... gi\|205338687, gi... - gi\|205338687\|gb\|EDZ25451.1\| rhodanese domain protein [Salmonella enterica subsp. enterica serovar He... lcl\|NC_016856.1_... - [gene=yibN] [protein=putative rhodanese-like sulfurtransferase] [protein_id=YP_005239943.1] [locatio... gi\|168260543, gi... - gi\|205350478\|gb\|EDZ37109.1\| rhodanese domain protein [Salmonella enterica subsp. enterica serovar Ha... gi\|168464990, gi... - gi\|195632433\|gb\|EDX50917.1\| rhodanese domain protein [Salmonella enterica subsp. enterica serovar Ne... gi\|205344321, gi... - gi\|205344321\|gb\|EDZ31085.1\| rhodanese domain protein [Salmonella enterica subsp. enterica serovar We...	151.0	[0..1]	[143..1]

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Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQEYIEFFKA HTLLSLAWVG LFVMLVVSVI KSSFSKIKNV THQELTIMVN RQDAKVVDVR  60
   61 SNDDFRKGHI VGAVNVTLAD IKNNQVSALE KFKGSPIILV CNAGMTSSQA AQLLSKQGFE 120
  121 NLYNLKGGMG EWQAANMPVS KSKR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.0
Match:	1gmxA
Description:	Sulfurtransferase GlpE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.687308230067573	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: