YRC Public Data Repository - Protein Structure Prediction

Protein:	GPMI_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	514 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GPMI_SHEON.

Description	E-value	Query Range	Subject Range
GPMI2_METAC, GMI... - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2 OS=Methanosarcina acetivorans GN=gpmI2... GPMI2_METAC - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2 OS=Methanosarcina acetivorans (strain ...	733.0	[0..1]	[510..7]
GPMI1_METBF - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1 OS=Methanosarcina barkeri (strain Fusa...	725.0	[0..1]	[510..4]
GPMI_METMA - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Methanosarcina mazei (strain ATCC BAA... GPMI_METMA - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Methanosarcina mazei GN=gpmI PE=3 SV=...	710.0	[0..1]	[510..7]
GPMI_CLOP1 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium perfringens (strain ATCC ...	705.0	[0..4]	[512..2]
GPMI_CLOPS - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium perfringens (strain SM101...	704.0	[0..4]	[512..2]
GPMI_CLOPE - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium perfringens GN=gpmI PE=3 ... GPMI_CLOPE - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium perfringens (strain 13 / ...	703.0	[0..4]	[512..2]
GPMI_SALTI - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Salmonella typhi GN=gpmI PE=3 SV=2 GPMI_SALTI - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Salmonella typhi GN=gpmI PE=3 SV=2 gi\|161486772 - gi\|161486772\|ref\|NP_807437.2\| phosphoglyceromutase [Salmonella enterica subsp. enterica serovar Typh... gi\|213999708 - gi\|213999708\|ref\|ZP_03410443.1\| phosphoglyceromutase [Salmonella enterica subsp. enterica serovar Ty... gi\|161501906 - gi\|161501906\|ref\|NP_458223.2\| phosphoglyceromutase [Salmonella enterica subsp. enterica serovar Typh... gi\|213163816 - gi\|213163816\|ref\|ZP_03349526.1\| phosphoglyceromutase [Salmonella enterica subsp. enterica serovar Ty... gi\|213647903 - gi\|213647903\|ref\|ZP_03377956.1\| phosphoglyceromutase [Salmonella enterica subsp. enterica serovar Ty... gi\|213852181 - gi\|213852181\|ref\|ZP_03381713.1\| phosphoglyceromutase [Salmonella enterica subsp. enterica serovar Ty...	703.0	[0..1]	[510..1]
GPMI_SALTY - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Salmonella typhimurium GN=gpmI PE=3 S... gi\|199604682, gi... - gi\|200387584\|ref\|ZP_03214196.1\| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Salmone... gi\|197240317, gi... - gi\|197262062\|ref\|ZP_03162136.1\| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Salmone... gi\|197214282, gi... - gi\|197250579\|ref\|YP_002148637.1\| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Salmon... gi\|194450570, gi... - gi\|194450570\|ref\|YP_002047735.1\| phosphoglyceromutase [Salmonella enterica subsp. enterica serovar H... GPMI_SALTY - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Salmonella typhimurium (strain LT2 / ... gi\|207858941, gi... - gi\|207858941\|ref\|YP_002245592.1\| phosphoglyceromutase [Salmonella enterica subsp. enterica serovar E... GPMI_SALTY - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Salmonella typhimurium GN=gpmI PE=3 S... gi\|205274474, gi... - gi\|205354693\|ref\|YP_002228494.1\| phosphoglyceromutase [Salmonella enterica subsp. enterica serovar G... GPMI_SALPA - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Salmonella paratyphi A (strain ATCC 9... gi\|168818467, gi... - gi\|205344603\|gb\|EDZ31367.1\| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Salmonella ... gi\|168260542, gi... - gi\|205350418\|gb\|EDZ37049.1\| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Salmonella ... gi\|205338975, gi... - gi\|205338975\|gb\|EDZ25739.1\| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Salmonella ... gi\|167994324, gi... - gi\|205327794\|gb\|EDZ14558.1\| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Salmonella ... GPMI_SALPA - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Salmonella paratyphi A GN=gpmI PE=3 S... lcl\|NC_016856.1_... - [gene=pmgI] [protein=phosphoglyceromutase] [protein_id=YP_005239944.1] [location=3911256..3912800]	702.0	[0..1]	[510..1]

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Predicted Domain #1

Region A:
Residues: [1-514]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTTKRPIAL LILDGWGYRE NTHMNAVYHA NTPVLDRLNA QYAHGLISGS GLDVGLPDGQ  60
   61 MGNSEVGHIN LGSGRIVYQE LTRISKAIAD HEFEQNPALC DAVDAAVKTG GAVHIMGLLS 120
  121 PGGVHSHEEH IEAMCRMAVA RGATKVYLHA FLDGRDTPPR SAKSSLSHFD DLFTTLGHGR 180
  181 IASIIGRYFA MDRDNRWDRV SQAYDLITQG KSKFQYDNAV TALEAAYSRD ENDEFVSSSA 240
  241 ITDANGQVAT LQDGDALIFM NFRADRARQI TRSFINPEFD GFARAVTPKV NFVTLTEYAA 300
  301 DIKAPIAYPS DNLVNTLGEV LQNRGRTQLR ISETEKYAHV TFFFNGGKEE PFNGEDRILI 360
  361 NSPKVATYDL QPEMSSTELT DKLVAAIEST KYDVIICNYP NGDMVGHTGN FDAAVKACEA 420
  421 VDACIGRVVE ALAKVGGECI ITADHGNAEQ MTDETTGQAH TAHTSELVPF VFVGRDATID 480
  481 KGGKLSDVAP TILHLMGESI PAEMTGKPLI HVKE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1ejjA
Description:	2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain; 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, catalytic domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
phosphoglycerate mutase activity	4.09705445001692	bayes_pls_golite062009
hydrolase activity	3.01886601704869	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	2.80771517640162	bayes_pls_golite062009
catalytic activity	2.31328968099128	bayes_pls_golite062009
intramolecular transferase activity, phosphotransferases	1.84947276418569	bayes_pls_golite062009
binding	0.727515968610877	bayes_pls_golite062009
intramolecular transferase activity	0.343539964510921	bayes_pls_golite062009
protein binding	0.0855749430431131	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: