YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24345401, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	182 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24345401, gi|....

Description	E-value	Query Range	Subject Range
gi\|71163438, gi\|... - gi\|71275860\|ref\|ZP_00652144.1\| transferase hexapeptide repeat [Xylella fastidiosa Dixon], gi\|7116343... gi\|71899356, gi\|... - gi\|71899356\|ref\|ZP_00681516.1\| transferase hexapeptide repeat [Xylella fastidiosa Ann-1], gi\|7173087...	164.0	[0..2]	[179..1]
gi\|182631530, gi... - gi\|182681420\|ref\|YP_001829580.1\| transferase [Xylella fastidiosa M23], gi\|182631530\|gb\|ACB92306.1\| t... gi\|28056818, gi\|... - gi\|28198727\|ref\|NP_779041.1\| transferase [Xylella fastidiosa Temecula1], gi\|28056818\|gb\|AAO28690.1\| ... gi\|22997601, gi\|... - gi\|71897945\|ref\|ZP_00680150.1\| transferase hexapeptide repeat [Xylella fastidiosa Ann-1], gi\|7173218...	163.0	[0..2]	[179..1]
gi\|238792975, gi... - gi\|77978266\|ref\|ZP_00833698.1\| COG0663: Carbonic anhydrases/acetyltransferases, isoleucine patch sup...	162.0	[0..1]	[180..1]
gi\|11279163 - pir\|\|C82613 conserved hypothetical protein XF1984 [imported] - Xylella fastidiosa (strain 9a5c) gi\|15838578, gi\|... - gi\|9107095\|gb\|AAF84786.1\|AE004018_2 conserved hypothetical protein [Xylella fastidiosa 9a5c], gi\|158...	162.0	[0..2]	[179..1]
gi\|71908353, gi\|... - gi\|71908353\|ref\|YP_285940.1\| hexapaptide repeat-containing transferase [Dechloromonas aromatica RCB]...	161.0	[0..4]	[181..2]
gi\|67519595, gi\|... - gi\|92112534\|ref\|YP_572462.1\| anhydrase family 3 protein [Chromohalobacter salexigens DSM 3043], gi\|9...	161.0	[0..6]	[178..4]
gi\|78690214, gi\|... - gi\|78690214\|ref\|ZP_00854864.1\| carbonic anhydrase, family 3 [Shewanella sp. MR-7], gi\|78510366\|gb\|EA...	161.0	[0..1]	[181..1]
gi\|82497765, gi\|... - gi\|82497765\|ref\|ZP_00883293.1\| carbonic anhydrase, family 3 [Shewanella sp. MR-4], gi\|82404275\|gb\|EA...	160.0	[0..1]	[181..1]
gi\|167055384, gi... - gi\|167425694\|ref\|ZP_02317447.1\| transferase [Yersinia pestis biovar Mediaevalis str. K1973002], gi\|1... gi\|21961036, gi\|... - gi\|22127899\|ref\|NP_671322.1\| transferase [Yersinia pestis KIM], gi\|21961036\|gb\|AAM87573.1\|AE014004_1... gi\|167419192, gi... - gi\|167419192\|ref\|ZP_02310945.1\| transferase [Yersinia pestis biovar Orientalis str. MG05-1020], gi\|1... gi\|167051737, gi... - gi\|167399233\|ref\|ZP_02304757.1\| transferase [Yersinia pestis biovar Antiqua str. UG05-0454], gi\|1670... gi\|166205497, gi... - gi\|166213199\|ref\|ZP_02239234.1\| transferase [Yersinia pestis biovar Antiqua str. B42003004], gi\|1662... gi\|165990632, gi... - gi\|166010542\|ref\|ZP_02231440.1\| transferase [Yersinia pestis biovar Antiqua str. E1979001], gi\|16599... gi\|165915693, gi... - gi\|165936577\|ref\|ZP_02225145.1\| transferase [Yersinia pestis biovar Orientalis str. IP275], gi\|16591... gi\|165920132, gi... - gi\|165927856\|ref\|ZP_02223688.1\| transferase [Yersinia pestis biovar Orientalis str. F1991016], gi\|16...	159.0	[0..5]	[180..18]
gi\|162352367, gi... - gi\|162419552\|ref\|YP_001605214.1\| hypothetical protein YpAngola_A0623 [Yersinia pestis Angola], gi\|16... gi\|153947330, gi... - gi\|153947330\|ref\|YP_001402824.1\| hypothetical protein YpsIP31758_3876 [Yersinia pseudotuberculosis I... gi\|45434961, gi\|... - gi\|45440106\|ref\|NP_991645.1\| putative transferase [Yersinia pestis biovar Microtus str. 91001], gi\|4... gi\|145209185, gi... - gi\|145597489\|ref\|YP_001161564.1\| hypothetical protein YPDSF_0170 [Yersinia pestis Pestoides F], gi\|1... gi\|229836270, gi... - gi\|229836270\|ref\|ZP_04456437.1\| carbonic anhydrase, family 3 [Yersinia pestis Pestoides A], gi\|22970...	159.0	[0..1]	[180..1]

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Predicted Domain #1

Region A:
Residues: [1-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGPLRTYQG IHPQLGDNVY VDAASVLVGD IALDTDASIW PMVAARGDVN HIRIGKRSNV  60
   61 QDGSILHVTR KSASRPEGHP LIIGDDVTIG HKAMLHGCKV GNRVLVGMGA IILDGAILED 120
  121 DVILGAGSLV PPGKVLESGY LYVGSPAKQA RPLTEAELKF LPESADNYVR LKNEYLAEPQ 180
  181 PN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.69897
Match:	1xhdA
Description:	X-ray crystal structure of putative acetyltransferase, product of BC4754 gene [Bacillus cereus]
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.59855937987599	bayes_pls_golite062009
transferase activity	1.3237300007392	bayes_pls_golite062009
transferase activity, transferring acyl groups	0.886009567107207	bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups	0.876088267537604	bayes_pls_golite062009
acyltransferase activity	0.870444687691191	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: