YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24371629, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	469 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24371629, gi|....

Description	E-value	Query Range	Subject Range
gi\|78687598, gi\|... - gi\|78687598\|ref\|ZP_00852342.1\| potassium uptake protein TrkA [Shewanella sp. ANA-3], gi\|78504672\|gb\|... gi\|82404262, gi\|... - gi\|82497752\|ref\|ZP_00883280.1\| potassium uptake protein TrkA [Shewanella sp. MR-4], gi\|82404262\|gb\|E... gi\|78690227, gi\|... - gi\|78690227\|ref\|ZP_00854877.1\| potassium uptake protein TrkA [Shewanella sp. MR-7], gi\|78510379\|gb\|E...	324.0	[0..1]	[469..1]
gi\|78366967, gi\|... - gi\|78366967\|ref\|ZP_00837242.1\| TrkA-N:TrkA-C [Shewanella sp. PV-4], gi\|78360910\|gb\|EAP02739.1\| TrkA-...	323.0	[0..1]	[469..1]
gi\|68548549, gi\|... - gi\|68548549\|ref\|ZP_00588042.1\| TrkA-N:TrkA-C [Shewanella amazonensis SB2B], gi\|68513752\|gb\|EAN37520....	322.0	[0..1]	[469..1]
gi\|114332502, gi... - gi\|69953386\|ref\|ZP_00640531.1\| TrkA-N:TrkA-C [Shewanella frigidimarina NCIMB 400], gi\|69163554\|gb\|EA...	322.0	[0..1]	[469..1]
gi\|120556947, gi... - gi\|82741932\|ref\|ZP_00904641.1\| potassium uptake protein TrkA [Shewanella sp. W3-18-1], gi\|82720717\|g... gi\|77810249, gi\|... - gi\|77814729\|ref\|ZP_00813983.1\| TrkA-N:TrkA-C [Shewanella putrefaciens CN-32], gi\|77810249\|gb\|EAO9463... gi\|124508138, gi... - gi\|124548971\|ref\|ZP_01707415.1\| TrkA-N [Shewanella putrefaciens 200], gi\|124508138\|gb\|EAY52241.1\| Tr...	321.0	[0..1]	[469..1]
gi\|151363197, gi... - gi\|152998579\|ref\|YP_001364260.1\| potassium transporter peripheral membrane component [Shewanella bal... gi\|146863370, gi... - gi\|217971244\|ref\|YP_002355995.1\| potassium transporter peripheral membrane component [Shewanella bal... gi\|160873154, gi... - gi\|160873154\|ref\|YP_001552470.1\| potassium transporter peripheral membrane component [Shewanella bal... gi\|68543014, gi\|... - gi\|68543014\|ref\|ZP_00582732.1\| TrkA-N:TrkA-C [Shewanella baltica OS155], gi\|68519303\|gb\|EAN42842.1\| ...	319.0	[0..1]	[469..1]
gi\|69945075, gi\|... - gi\|91791390\|ref\|YP_561041.1\| potassium transporter peripheral membrane component [Shewanella denitri...	318.0	[0..1]	[469..1]
gi\|54310620, gi\|... - gi\|54310620\|ref\|YP_131640.1\| potassium transporter peripheral membrane component [Photobacterium pro...	307.0	[0..1]	[468..1]
gi\|90325245, gi\|... - gi\|90413776\|ref\|ZP_01221764.1\| Putative potassium uptake protein TrkA [Photobacterium profundum 3TCK...	305.0	[0..1]	[468..1]
gi\|90437694, gi\|... - gi\|90581173\|ref\|ZP_01236972.1\| potassium transporter peripheral membrane component [Vibrio angustum ... gi\|89074757, gi\|... - gi\|89074757\|ref\|ZP_01161215.1\| Putative potassium uptake protein TrkA [Photobacterium sp. SKA34], gi...	305.0	[0..1]	[468..1]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIIILGAGQ VGGTLAENLV GENNDITIVD SDKSRLRALQ DKYDLRVVAG HGAHPNVLKE  60
   61 AGAEDADMLI AVTNSDECNM VACQMAYSLF GTPTKIARIR SEPYLAMRDK LFINS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.0
Match:	1lssA
Description:	Ktn Mja218
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.40143066098294	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	0.794265596378362	bayes_pls_golite062009
potassium ion transmembrane transporter activity	0.7917593970345	bayes_pls_golite062009
cation transmembrane transporter activity	0.667941911014379	bayes_pls_golite062009
ion transmembrane transporter activity	0.644377496622781	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	0.455628854268609	bayes_pls_golite062009
metal ion transmembrane transporter activity	0.439757800700606	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	0.189869347204878	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [116-242]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETKNSDGRPR GGFVIDELIA PEQLVTAYIE RLVEYPGALQ VLEFAEGRLS LVAVRAYYGG  60
   61 PLVGNALAAL REHMPNIDTR VAAIFRQGRP IMPRGTTIIE ADDEVFFVAD SRHIRAVMSE 120
  121 MQKLDNS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.67
Match:	1lnqA
Description:	Potassium channel-related protein MthK
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [243-469]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YRNIMIAGGG NIGLGLAKRL ERTHSVKLIE HKFERAEALS EQLENTTVFC GDASDQELLL  60
   61 EEHIDQTDVF IAVTNDDEAN IMSALLAKRM GAKKVMVLIQ REAYVDIVQE ANIDIAISPQ 120
  121 QATISALLTH IRQGDICNVY SLRRGAAEAI EAIAHGDSST SKVVGKAIGD IKLPPGTTIG 180
  181 AIVRNEEVLM AHDKTVIEQG DHVVLFLVNK KFIGEVEKLF QPSAFFF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.522879
Match:	1lnqA
Description:	Potassium channel-related protein MthK
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.40143066098294	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	0.794265596378362	bayes_pls_golite062009
potassium ion transmembrane transporter activity	0.7917593970345	bayes_pls_golite062009
cation transmembrane transporter activity	0.667941911014379	bayes_pls_golite062009
ion transmembrane transporter activity	0.644377496622781	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	0.455628854268609	bayes_pls_golite062009
metal ion transmembrane transporter activity	0.439757800700606	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	0.189869347204878	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: