YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24345384, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	480 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24345384, gi|....

Description	E-value	Query Range	Subject Range
gi\|77457706, gi\|... - gi\|77457706\|ref\|YP_347211.1\| K+ transporter Trk [Pseudomonas fluorescens Pf0-1], gi\|77381709\|gb\|ABA7...	392.0	[0..17]	[480..19]
gi\|95111895, gi\|... - gi\|95111895\|emb\|CAK16619.1\| putative potassium uptake protein, TrkH family [Pseudomonas entomophila ... gi\|95111895 - gi\|95111895\|emb\|CAK16619.1\| putative potassium uptake protein, TrkH family [Pseudomonas entomophila ...	392.0	[0..17]	[480..17]
gi\|63257529, gi\|... - gi\|66046822\|ref\|YP_236663.1\| K+ transporter Trk [Pseudomonas syringae pv. syringae B728a], gi\|632575...	389.0	[0..17]	[480..19]
gi\|26991192, gi\|... - gi\|26991192\|ref\|NP_746617.1\| TrkH family potassium uptake protein [Pseudomonas putida KT2440], gi\|24...	389.0	[0..17]	[480..19]
gi\|119765681, gi... - gi\|68548550\|ref\|ZP_00588043.1\| K+ transporter Trk [Shewanella amazonensis SB2B], gi\|68513753\|gb\|EAN3...	389.0	[0..1]	[480..1]
gi\|229606602, gi... - gi\|229606602\|ref\|YP_002877250.1\| potassium uptake protein TrkH [Vibrio cholerae MJ-1236], gi\|2293692... gi\|197751517, gi... - gi\|254291097\|ref\|ZP_04961894.1\| potassium uptake protein TrkH [Vibrio cholerae AM-19226], gi\|1977515... gi\|153830122, gi... - gi\|153830122\|ref\|ZP_01982789.1\| potassium uptake protein TrkH [Vibrio cholerae 623-39], gi\|148874386... gi\|121587271, gi... - gi\|121587271\|ref\|ZP_01677044.1\| potassium uptake protein TrkH [Vibrio cholerae 2740-80], gi\|12154851... gi\|124116209, gi... - gi\|153212983\|ref\|ZP_01948577.1\| potassium uptake protein TrkH [Vibrio cholerae 1587], gi\|124116209\|g... gi\|153224332, gi... - gi\|153224332\|ref\|ZP_01954389.1\| potassium uptake protein TrkH [Vibrio cholerae MAK 757], gi\|12411769... gi\|153802781, gi... - gi\|153802781\|ref\|ZP_01957367.1\| potassium uptake protein TrkH [Vibrio cholerae MZO-3], gi\|124121694\|... gi\|153817579, gi... - gi\|153817579\|ref\|ZP_01970246.1\| potassium uptake protein TrkH [Vibrio cholerae NCTC 8457], gi\|126511... gi\|126520527, gi... - gi\|229508834\|ref\|ZP_04398325.1\| potassium uptake protein TrkH [Vibrio cholerae B33], gi\|229354109\|gb... gi\|149739794, gi... - gi\|153826408\|ref\|ZP_01979075.1\| potassium uptake protein TrkH [Vibrio cholerae MZO-2], gi\|149739794\|... gi\|125618251, gi... - gi\|75829921\|ref\|ZP_00759210.1\| COG0168: Trk-type K+ transport systems, membrane components [Vibrio c... gi\|227116505, gi... - gi\|75828108\|ref\|ZP_00757543.1\| COG0168: Trk-type K+ transport systems, membrane components [Vibrio c... gi\|116216259, gi... - gi\|75823064\|ref\|ZP_00752598.1\| COG0168: Trk-type K+ transport systems, membrane components [Vibrio c... gi\|227080279, gi... - gi\|227080279\|ref\|YP_002808830.1\| potassium uptake protein TrkH [Vibrio cholerae M66-2], gi\|227008167... gi\|254225566, gi... - gi\|75820538\|ref\|ZP_00750583.1\| COG0168: Trk-type K+ transport systems, membrane components [Vibrio c... gi\|229354600, gi... - gi\|229508327\|ref\|ZP_04397831.1\| potassium uptake protein TrkH [Vibrio cholerae BX 330286], gi\|229354... gi\|9654435, gi\|1... - gi\|9654435\|gb\|AAF93220.1\| potassium uptake protein TrkH [Vibrio cholerae O1 biovar El Tor str. N1696... gi\|121629817, gi... - gi\|75816180\|ref\|ZP_00746658.1\| COG0168: Trk-type K+ transport systems, membrane components [Vibrio c... gi\|229347019, gi... - gi\|229515919\|ref\|ZP_04405376.1\| potassium uptake protein TrkH [Vibrio cholerae TMA 21], gi\|229347019... gi\|11280005 - pir\|\|E82372 potassium uptake protein TrkH VC0042 [imported] - Vibrio cholerae (strain N16961 serogro... gi\|229517105, gi... - gi\|229517105\|ref\|ZP_04406551.1\| potassium uptake protein TrkH [Vibrio cholerae RC9], gi\|229346168\|gb... gi\|229530172, gi... - gi\|229530172\|ref\|ZP_04419561.1\| potassium uptake protein TrkH [Vibrio cholerae 12129(1)], gi\|2293323...	387.0	[0..1]	[480..1]
gi\|148510702, gi... - gi\|82739212\|ref\|ZP_00902023.1\| K+ transporter Trk [Pseudomonas putida F1], gi\|82713707\|gb\|EAP48810.1... tr\|E4R9Y8\|E4R9Y8... - Trk system potassium uptake protein OS=Pseudomonas putida (strain BIRD-1) GN=PPUBIRD1_1392 PE=3 SV=1 tr\|I7CDE5\|I7CDE5... - Trk system potassium uptake protein OS=Pseudomonas putida (strain DOT-T1E) GN=trkH PE=3 SV=1	387.0	[0..17]	[480..19]
gi\|71736632, gi\|... - gi\|71736632\|ref\|YP_275700.1\| potassium uptake protein TrkH [Pseudomonas syringae pv. phaseolicola 14...	386.0	[0..17]	[480..19]
gi\|15677999, gi\|... - gi\|66731902\|gb\|AAY52137.1\| bis(5`-nucleosyl)-tetraphosphatase, symmetrical/Trk system potassium upta...	386.0	[0..1]	[479..282]
gi\|27364476, gi\|... - gi\|27364476\|ref\|NP_760004.1\| potassium uptake protein TrkH [Vibrio vulnificus CMCP6], gi\|27360595\|gb...	386.0	[0..1]	[479..1]

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Predicted Domain #1

Region A:
Residues: [1-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNFRALLFI LGLFLSMLTA FMFAPMLVAV VNGEETVGSF MLSALATGIC ASLCLHNGQS  60
   61 KGINLNIRDM FLLTSLTWLI VSLFAAMPFT LYHGIGYTDA FFETMSGITT TGSTVLVGLD 120
  121 TMDHSILIWR SLLQWLGGIG FIVMAVAILP FLNVGGMRLF RTESSDWSDK AVPRTQSMAK 180
  181 HLFFIYILLT IICSVAYHLA GMTWFQAINH AMTTLSTGGY STSDSSMAAF SN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [233-313]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SAHWVGVVFM AAGGLPLLMF VQMIQQRDVK VWNDAQVKGF LFFLTFVSCS IGFWLWQTRD  60
   61 IALIDALRLS SFNVVSVVTT T

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [314-480]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GYGLTDYGAW GAFANIAFLF LMFVGSCSGS TSGGIKIFRF QIAGAIMREQ LKQQCHPNGI  60
   61 FRERYNNRLI TEDIVRSLIT FVLLYMFVIV GLSVILVLTG LDPVTSFTGA ITAVSNVGPG 120
  121 LGPIIGPVGN FSTLPDLAKW ALSLGMLLGR LEILTVAVLF HPSFWKY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits