YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24345383, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	184 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24345383, gi|....

Description	E-value	Query Range	Subject Range
gi\|78687596, gi\|... - gi\|78687596\|ref\|ZP_00852340.1\| Protoporphyrinogen oxidase [Shewanella sp. ANA-3], gi\|78504670\|gb\|EAP...	148.0	[0..1]	[184..1]
gi\|74314361, gi\|... - gi\|74314361\|ref\|YP_312780.1\| protoporphyrinogen oxidase [Shigella sonnei Ss046], gi\|73857838\|gb\|AAZ9...	148.0	[0..2]	[179..1]
gi\|254039063, gi... - gi\|254039063\|ref\|ZP_04873114.1\| protoporphyrinogen oxidase [Escherichia sp. 1_1_43], gi\|226838754\|gb... gi\|192958571, gi... - gi\|75238298\|ref\|ZP_00722297.1\| COG4635: Flavodoxin [Escherichia coli E110019], gi\|193067951\|ref\|ZP_0... gi\|157156299, gi... - gi\|75188590\|ref\|ZP_00701857.1\| COG4635: Flavodoxin [Escherichia coli E24377A], gi\|157156299\|ref\|YP_0...	148.0	[0..2]	[179..1]
gi\|168753751, gi... - gi\|189358986\|gb\|EDU77405.1\| protoporphyrinogen oxidase [Escherichia coli O157:H7 str. EC4401], gi\|16... gi\|168750334, gi... - gi\|188015413\|gb\|EDU53535.1\| protoporphyrinogen oxidase [Escherichia coli O157:H7 str. EC4113], gi\|16... gi\|168775595, gi... - gi\|187768900\|gb\|EDU32744.1\| protoporphyrinogen oxidase [Escherichia coli O157:H7 str. EC4196], gi\|16... gi\|189362625, gi... - gi\|189362625\|gb\|EDU81044.1\| protoporphyrinogen oxidase [Escherichia coli O157:H7 str. EC4486], gi\|16... gi\|115515252, gi... - gi\|117626128\|ref\|YP_859451.1\| protoporphyrinogen oxidase [Escherichia coli APEC O1], gi\|115515252\|gb... gi\|217322648, gi... - gi\|217326427\|ref\|ZP_03442511.1\| protoporphyrinogen oxidase [Escherichia coli O157:H7 str. TW14588], ... gi\|215267261, gi... - gi\|215489189\|ref\|YP_002331620.1\| protoporphyrinogen oxidase [Escherichia coli O127:H6 str. E2348/69]... HEMG_ECOL6 - Protoporphyrinogen IX dehydrogenase [menaquinone] OS=Escherichia coli O6 GN=hemG PE=3 SV=1 gi\|218367700, gi... - gi\|218560931\|ref\|YP_002393844.1\| protoporphyrinogen oxidase [Escherichia coli S88], gi\|218367700\|emb... gi\|218556414, gi... - gi\|218556414\|ref\|YP_002389328.1\| protoporphyrinogen oxidase [Escherichia coli IAI1], gi\|218363183\|em... gi\|218692142, gi... - gi\|218692142\|ref\|YP_002400354.1\| protoporphyrinogen oxidase [Escherichia coli ED1a], gi\|218429706\|em... HEMG_ECOLI - Protoporphyrinogen oxidase (EC 1.3.3.4) (PPO) - Escherichia coli gi\|189373236, gi... - gi\|189373236\|gb\|EDU91652.1\| protoporphyrinogen oxidase [Escherichia coli O157:H7 str. EC869], gi\|168... gi\|189001431, gi... - gi\|189001431\|gb\|EDU70417.1\| protoporphyrinogen oxidase [Escherichia coli O157:H7 str. EC4076], gi\|16... gi\|169891163, gi... - gi\|170083328\|ref\|YP_001732648.1\| protoporphyrin oxidase, flavoprotein [Escherichia coli str. K-12 su... gi\|169757058, gi... - gi\|170022130\|ref\|YP_001727084.1\| protoporphyrinogen oxidase [Escherichia coli ATCC 8739], gi\|1697570... gi\|208813625, gi... - gi\|208813625\|ref\|ZP_03254954.1\| protoporphyrinogen oxidase [Escherichia coli O157:H7 str. EC4045], g... gi\|208727287, gi... - gi\|208807486\|ref\|ZP_03249823.1\| protoporphyrinogen oxidase [Escherichia coli O157:H7 str. EC4206], g... gi\|209158590, gi... - gi\|209397190\|ref\|YP_002273367.1\| protoporphyrinogen oxidase [Escherichia coli O157:H7 str. EC4115], ... gi\|208741368, gi... - gi\|208821245\|ref\|ZP_03261565.1\| protoporphyrinogen oxidase [Escherichia coli O157:H7 str. EC4042], g... gi\|89110172, gi\|... - gi\|89110172\|ref\|AP_003952.1\| protoporphyrin oxidase, flavoprotein [Escherichia coli str. K-12 substr... gi\|81243120, gi\|... - gi\|82778972\|ref\|YP_405321.1\| protoporphyrinogen oxidase [Shigella dysenteriae Sd197], gi\|81243120\|gb... gi\|75512597, gi\|... - gi\|75512597\|ref\|ZP_00735109.1\| COG4635: Flavodoxin [Escherichia coli 53638], gi\|188492382\|ref\|ZP_029... gi\|157163324, gi... - gi\|157163324\|ref\|YP_001460642.1\| protoporphyrinogen oxidase [Escherichia coli HS], gi\|157069004\|gb\|A... EG11485 - protoporphyrin oxidase, flavoprotein / Protoporphyrinogen oxidase; neomycin sensitivity; flavodoxin-... HEMG_ECOL6 - Protoporphyrinogen IX dehydrogenase [menaquinone] OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 70... HEMG_ECO57 - Protoporphyrinogen IX dehydrogenase [menaquinone] OS=Escherichia coli O157:H7 GN=hemG PE=3 SV=1 gi\|83585891, gi\|... - gi\|83585891\|ref\|ZP_00924530.1\| COG4635: Flavodoxin [Escherichia coli 101-1], gi\|194438612\|ref\|ZP_030... EG11485 - protoporphyrin oxidase, flavoprotein / Protoporphyrinogen oxidase; neomycin sensitivity; flavodoxin-... gi\|83569316 - gi\|83569316\|ref\|ZP_00920771.1\| COG4635: Flavodoxin [Shigella dysenteriae 1012] gi\|15804440, gi\|... - gi\|15804440\|ref\|NP_290480.1\| protoporphyrinogen oxidase [Escherichia coli O157:H7 EDL933], gi\|125187... gi\|227888538, gi... - gi\|227888538\|ref\|ZP_04006343.1\| protoporphyrinogen oxidase [Escherichia coli 83972], gi\|227834377\|gb... gi\|237702883, gi... - gi\|237702883\|ref\|ZP_04533364.1\| protoporphyrinogen oxidase [Escherichia sp. 3_2_53FAA], gi\|226903054... gi\|238863328, gi... - gi\|238902923\|ref\|YP_002928719.1\| protoporphyrin oxidase, flavoprotein [Escherichia coli BW2952], gi\|... gi\|242379393, gi... - gi\|251787120\|ref\|YP_003001424.1\| hypothetical protein B21_03690 [Escherichia coli BL21], gi\|24237939... gi\|254290557, gi... - gi\|254290557\|ref\|YP_003056305.1\| protoporphyrin oxidase, flavoprotein [Escherichia coli BL21(DE3)], ... gi\|91213397, gi\|... - gi\|91213397\|ref\|YP_543383.1\| protoporphyrinogen oxidase [Escherichia coli UTI89], gi\|91074971\|gb\|ABE... gi\|254163807, gi... - gi\|254163807\|ref\|YP_003046915.1\| protoporphyrin oxidase, flavoprotein [Escherichia coli B str. REL60... gi\|13364254, gi\|... - gi\|15834032\|ref\|NP_312805.1\| protoporphyrinogen oxidase [Escherichia coli O157:H7 str. Sakai], gi\|13... gi\|254595246, gi... - gi\|254795846\|ref\|YP_003080683.1\| protoporphyrin oxidase, flavoprotein [Escherichia coli O157:H7 str....	148.0	[0..2]	[179..1]
gi\|192926668, gi... - gi\|75256228\|ref\|ZP_00727906.1\| COG4635: Flavodoxin [Escherichia coli E22], gi\|193065701\|ref\|ZP_03046... gi\|75230809, gi\|... - gi\|75230809\|ref\|ZP_00717272.1\| COG4635: Flavodoxin [Escherichia coli B7A], gi\|191166102\|ref\|ZP_03027... gi\|75209525, gi\|... - gi\|75209525\|ref\|ZP_00709746.1\| COG4635: Flavodoxin [Escherichia coli B171], gi\|194429237\|ref\|ZP_0306... gi\|209914586, gi... - gi\|209921327\|ref\|YP_002295411.1\| protoporphyrinogen oxidase [Escherichia coli SE11], gi\|209914586\|db... gi\|218697569, gi... - gi\|218697569\|ref\|YP_002405236.1\| protoporphyrinogen oxidase [Escherichia coli 55989], gi\|218354301\|e...	148.0	[0..2]	[179..1]
gi\|148250\|gb\|AAA... - o181 [Escherichia coli] gi\|148250 - gi\|148250\|gb\|AAA67647.1\| o181 [Escherichia coli]	147.0	[0..2]	[179..1]
gi\|110807460, gi... - gi\|110807460\|ref\|YP_690980.1\| protoporphyrinogen oxidase [Shigella flexneri 5 str. 8401], gi\|1106170... gi\|24115144, gi\|... - gi\|24115144\|ref\|NP_709654.1\| protoporphyrinogen oxidase [Shigella flexneri 2a str. 301], gi\|24054418... gi\|30043115, gi\|... - gi\|30064855\|ref\|NP_839026.1\| protoporphyrinogen oxidase [Shigella flexneri 2a str. 2457T], gi\|300431...	147.0	[0..2]	[179..1]
gi\|82404260, gi\|... - gi\|82497750\|ref\|ZP_00883278.1\| Protoporphyrinogen oxidase [Shewanella sp. MR-4], gi\|82404260\|gb\|EAP4...	147.0	[0..1]	[184..1]
gi\|78690229, gi\|... - gi\|78690229\|ref\|ZP_00854879.1\| Protoporphyrinogen oxidase [Shewanella sp. MR-7], gi\|78510381\|gb\|EAP2...	146.0	[0..1]	[184..1]
gi\|81247611, gi\|... - gi\|82546200\|ref\|YP_410147.1\| protoporphyrinogen oxidase [Shigella boydii Sb227], gi\|81247611\|gb\|ABB6...	146.0	[0..2]	[179..1]

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Predicted Domain #1

Region A:
Residues: [1-184]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRILVLYFT RGGHTAKIAN AIAEQLTLRG AKVDLVDINS AAATRINWSD YQLVALGACV  60
   61 LYGTYDKSVF QFIEQHVQAL SFLPNSFFCV NVVARNPEKR IPENNKYLQK FITLSPWTPA 120
  121 DLKIIAGKVD YPSWPWYDRL MIQLIMKITK GPTDPKAVID YTDWEDVKVY ADHLLTLVEV 180
  181 AEPA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.69897
Match:	1flvA
Description:	STRUCTURE OF THE OXIDIZED LONG CHAIN FLAVODOXIN FROM ANABAENA 7120 AT 2 ANGSTROMS RESOLUTION
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.275631658558537	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: