YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24371616, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	191 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24371616, gi|....

Description	E-value	Query Range	Subject Range
gi\|67982448, gi\|... - gi\|95930393\|ref\|ZP_01313130.1\| DNA-3-methyladenine glycosylase I [Desulfuromonas acetoxidans DSM 684...	331.0	[0..2]	[187..6]
gi\|77867583, gi\|... - gi\|77953611\|ref\|ZP_00818018.1\| DNA-3-methyladenine glycosylase I [Marinobacter aquaeolei VT8], gi\|77...	319.0	[0..5]	[187..7]
gi\|83856334, gi\|... - gi\|83856334\|ref\|ZP_00949863.1\| DNA-3-methyladenine glycosidase I [Croceibacter atlanticus HTCC2559],...	317.0	[0..1]	[187..1]
gi\|114045523, gi... - gi\|78690241\|ref\|ZP_00854891.1\| DNA-3-methyladenine glycosylase I [Shewanella sp. MR-7], gi\|78510393\|...	317.0	[0..1]	[191..1]
gi\|117918477, gi... - gi\|78687584\|ref\|ZP_00852328.1\| DNA-3-methyladenine glycosylase I [Shewanella sp. ANA-3], gi\|78504658...	317.0	[0..1]	[191..1]
gi\|82745721, gi\|... - gi\|82745721\|ref\|ZP_00908232.1\| DNA-3-methyladenine glycosylase I [Clostridium beijerincki NCIMB 8052...	316.0	[0..4]	[184..6]
gi\|85723880, gi\|... - gi\|85860789\|ref\|YP_462991.1\| DNA-3-methyladenine glycosylase [Syntrophus aciditrophicus SB], gi\|8572...	316.0	[0..3]	[187..6]
gi\|113968356, gi... - gi\|82497736\|ref\|ZP_00883264.1\| DNA-3-methyladenine glycosylase I [Shewanella sp. MR-4], gi\|82404246\|...	315.0	[0..1]	[190..1]
gi\|88918892, gi\|... - gi\|88934434\|ref\|ZP_01140077.1\| DNA-3-methyladenine glycosylase I [Geobacter uraniumreducens Rf4], gi...	315.0	[0..5]	[189..9]
gi\|115514957, gi... - gi\|117625833\|ref\|YP_859156.1\| 3-methyl-adenine DNA glycosylase I, constitutive [Escherichia coli APE... gi\|237703317, gi... - gi\|237703317\|ref\|ZP_04533798.1\| DNA-3-methyladenine glycosylase I [Escherichia sp. 3_2_53FAA], gi\|22... gi\|91213062, gi\|... - gi\|91213062\|ref\|YP_543048.1\| DNA-3-methyladenine glycosylase I [Escherichia coli UTI89], gi\|91074636...	314.0	[0..1]	[185..56]

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Predicted Domain #1

Region A:
Residues: [1-191]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEIRCNWVS DDPLYRDYHD NVWGRPVYDP KELFAKLCLD GQQAGLSWIT ILKKQQNYEQ  60
   61 AFADFEPAVI ATFDDAKVEE LMANPGIVRN RLKIHSIIRN AKGYLAYTAD GEDFSAFLWS 120
  121 FVGGKPRVNQ FTSMSQIPAQ TPESEAMSKA LKKLGFNFVG PTICYAFMQA VGMVNDHLVD 180
  181 CVAYDACCGG K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	85.30103
Match:	2ofiA
Description:	No description for 2ofiA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits