YRC Public Data Repository - Protein Structure Prediction

Protein:	RECF_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	360 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RECF_SHEON.

Description	E-value	Query Range	Subject Range
RECF_VIBVU - DNA replication and repair protein recF OS=Vibrio vulnificus GN=recF PE=3 SV=1 RECF_VIBVU - DNA replication and repair protein RecF OS=Vibrio vulnificus (strain CMCP6) GN=recF PE=3 SV=1	209.0	[0..1]	[358..1]
RECF_VIBVY - DNA replication and repair protein RecF OS=Vibrio vulnificus (strain YJ016) GN=recF PE=3 SV=1	207.0	[0..1]	[358..1]
RECF_VIBPA - DNA replication and repair protein recF OS=Vibrio parahaemolyticus GN=recF PE=3 SV=1 RECF_VIBPA - DNA replication and repair protein RecF OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 22106... gi\|153839066, gi... - gi\|153839066\|ref\|ZP_01991733.1\| DNA replication and repair protein RecF [Vibrio parahaemolyticus AQ3...	206.0	[0..1]	[357..1]
gi\|151937139, gi... - gi\|75854672\|ref\|ZP_00762350.1\| COG1195: Recombinational DNA repair ATPase (RecF pathway) [Vibrio sp....	206.0	[0..1]	[357..1]
gi\|91188106, gi\|... - gi\|91228346\|ref\|ZP_01262274.1\| recombination protein F [Vibrio alginolyticus 12G01], gi\|91188106\|gb\|...	206.0	[0..1]	[357..1]
gi\|21961124, gi\|... - gi\|22127979\|ref\|NP_671402.1\| recombination protein F [Yersinia pestis KIM], gi\|21961124\|gb\|AAM87653.... gi\|45438596, gi\|... - gi\|45443726\|ref\|NP_995265.1\| recombination protein F [Yersinia pestis biovar Microtus str. 91001], g...	205.0	[0..1]	[358..80]
gi\|167401621, gi... - gi\|167401621\|ref\|ZP_02307115.1\| DNA replication and repair protein recF [Yersinia pestis biovar Anti... gi\|51598225, gi\|... - gi\|51598225\|ref\|YP_072416.1\| recombination protein F [Yersinia pseudotuberculosis IP 32953], gi\|5159... gi\|108814113, gi... - gi\|108814113\|ref\|YP_649880.1\| recombination protein F [Yersinia pestis Nepal516], gi\|108777761\|gb\|AB... gi\|108782044, gi... - gi\|108810131\|ref\|YP_654047.1\| recombination protein F [Yersinia pestis Antiqua], gi\|108782044\|gb\|ABG...	204.0	[0..1]	[358..67]
RECF_SALDC - DNA replication and repair protein RecF OS=Salmonella dublin (strain CT_02021853) GN=recF PE=3 SV=1 gi\|197263684, gi... - gi\|197263684\|ref\|ZP_03163758.1\| DNA replication and repair protein RecF [Salmonella enterica subsp. ... RECF_SALCH - DNA replication and repair protein RecF OS=Salmonella choleraesuis (strain SC-B67) GN=recF PE=3 SV=1 RECF_SALA4 - DNA replication and repair protein RecF OS=Salmonella agona (strain SL483) GN=recF PE=3 SV=1 gi\|205350391, gi... - gi\|205350391\|gb\|EDZ37022.1\| DNA replication and repair protein RecF [Salmonella enterica subsp. ente... gi\|205332587, gi... - gi\|205332587\|gb\|EDZ19351.1\| DNA replication and repair protein RecF [Salmonella enterica subsp. ente... gi\|238913089 - gi\|238913089\|ref\|ZP_04656926.1\| recombination protein F [Salmonella enterica subsp. enterica serovar... RECF_SALCH - DNA replication and repair protein recF OS=Salmonella choleraesuis GN=recF PE=3 SV=1 RECF_SALCH - DNA replication and repair protein recF OS=Salmonella choleraesuis GN=recF PE=3 SV=1 RECF_SALPC - DNA replication and repair protein RecF OS=Salmonella paratyphi C (strain RKS4594) GN=recF PE=3 SV=1 RECF_SALEP - DNA replication and repair protein RecF OS=Salmonella enteritidis PT4 (strain P125109) GN=recF PE=3 ... RECF_SALG2 - DNA replication and repair protein RecF OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=rec...	203.0	[0..1]	[357..1]
RECF_SALPK - DNA replication and repair protein RecF OS=Salmonella paratyphi A (strain AKU_12601) GN=recF PE=3 SV... RECF_SALPA - DNA replication and repair protein RecF OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=rec... RECF_SALPA - DNA replication and repair protein recF OS=Salmonella paratyphi A GN=recF PE=3 SV=1	203.0	[0..1]	[357..1]
RECF_SALTI - DNA replication and repair protein recF OS=Salmonella typhi GN=recF PE=3 SV=3 gi\|213052918 - gi\|213052918\|ref\|ZP_03345796.1\| recombination protein F [Salmonella enterica subsp. enterica serovar... RECF_SALTI - DNA replication and repair protein RecF OS=Salmonella typhi GN=recF PE=3 SV=3 gi\|205344501, gi... - gi\|205344501\|gb\|EDZ31265.1\| DNA replication and repair protein RecF [Salmonella enterica subsp. ente... gi\|29143977, gi\|... - gi\|29143977\|ref\|NP_807319.1\| recombination protein F [Salmonella enterica subsp. enterica serovar Ty... gi\|213609169 - gi\|213609169\|ref\|ZP_03368995.1\| recombination protein F [Salmonella enterica subsp. enterica serovar... gi\|16762489 - gi\|16762489\|ref\|NP_458106.1\| recombination protein F [Salmonella enterica subsp. enterica serovar Ty... gi\|213581831 - gi\|213581831\|ref\|ZP_03363657.1\| recombination protein F [Salmonella enterica subsp. enterica serovar...	203.0	[0..1]	[357..1]

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Predicted Domain #1

Region A:
Residues: [1-360]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLIRLNIDS FRNIQLAQLS PSEGINLIYG QNGSGKTSIL EAIYFLGMGR SFRSHLSQRV  60
   61 INNDQDKLTL FATLNLPRGD SKIGLRRFRS GETEVKIDGE KVKRLSTLAE TLPIQVITPE 120
  121 SFSLLFEGPK SRRQFIDWGA FHTDPQFYAA WMNVRRVLKQ RNQMLRNGSP YDQIQYWDRE 180
  181 FIRYTEQVTE IRNRYVDSLN ELLKGIIGEF LPQVDVKVSF TRGWDSKTDF AQLLESQYPR 240
  241 DLATGHTVSG PHKADLRLRV GTLPAQDALS RGQLKLLVCA LRIAQGKLLK QQIDKHSIYL 300
  301 VDDLPSELDA QHRQLLLKQL VDTGAQVFVT AIEPAAIVDS LHTPPSRMFH VEHGRVTVIE 360
  361

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.0
Match:	2o5vA
Description:	No description for 2o5vA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits