| Protein: | gi|24371602, gi|... |
| Organism: | Shewanella oneidensis MR-1 |
| Length: | 516 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24371602, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
219.0 | [0..34] | [473..1460] |
|
|
205.0 | [0..17] | [472..600] |
|
|
204.0 | [0..2] | [509..19] |
|
|
189.0 | [0..20] | [476..182] |
|
|
187.0 | [0..1] | [477..3] |
|
|
187.0 | [0..2] | [509..45] |
|
|
183.0 | [0..2] | [509..36] |
|
Region A: Residues: [1-420] |
1 11 21 31 41 51
| | | | | |
1 MTTPVDAPKW PRQIPYIIAS EACERFSFYG MRNILTPFLM TALLLSIPEE LRGAVAKDVF 60
61 HSFVIGVYFF PLLGGWIADR FFGKYNTILW LSLIYCVGHA FLAIFEHSVQ GFYTGLFLIA 120
121 LGSGGIKPLV SSFMGDQFDQ SNKSLAQKAF DMFYFTINFG SFFASLSMPL LLKNFGAAVA 180
181 FGIPGVLMFV ATVFFWLGRK RYIHMPPEPK DPHGFLPVIR SALLTKVEGK GNIGLVLALI 240
241 GGVSAAYALV NIPTLGIVAG LCCAMVLVMG FVGAGASLQL ERARKSHPDA AVDGVRSVLR 300
301 ILVLFALVTP FWSLFDQKAS TWILQANDMV KPQWFEPAMM QALNPLLVML LIPFNNFVLY 360
361 PAIERMGVKL TALRKMGAGI AITGLSWIVV GTIQLMMDGG SALSIFWQIL PYALLTFGEV 420
421
|
| Detection Method: |  |
| Confidence: | 12.0 |
| Match: | 1pw4A |
| Description: | Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transporter activity | 4.09176719149278 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 3.59744164024479 | bayes_pls_golite062009 |
| transmembrane transporter activity | 3.5865018981083 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 3.54194478414824 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 2.21266150105753 | bayes_pls_golite062009 |
| organic acid transmembrane transporter activity | 2.15783210522667 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 1.79369588808394 | bayes_pls_golite062009 |
| active transmembrane transporter activity | 1.59419818573076 | bayes_pls_golite062009 |
| secondary active transmembrane transporter activity | 1.22264637452409 | bayes_pls_golite062009 |
| binding | 1.05701989682533 | bayes_pls_golite062009 |
| polyol transmembrane transporter activity | 0.924836669821548 | bayes_pls_golite062009 |
| alcohol transmembrane transporter activity | 0.924836669821548 | bayes_pls_golite062009 |
| glycerol transmembrane transporter activity | 0.812001619402678 | bayes_pls_golite062009 |
| symporter activity | 0.74591237387473 | bayes_pls_golite062009 |
| solute:cation symporter activity | 0.74591237387473 | bayes_pls_golite062009 |
| cation:sugar symporter activity | 0.143419068761182 | bayes_pls_golite062009 |
| sugar:hydrogen symporter activity | 0.143419068761182 | bayes_pls_golite062009 |
|
Region A: Residues: [421-516] |
1 11 21 31 41 51
| | | | | |
1 LVSATGLEFA YSQAPKAMKG TIMSFWTLSV TVGNLWVLLA NVSVKSPTVT EQIVQTGMSV 60
61 TAFQMFFFAG FAILAAIVFA LYARSYQMQD HYRQAT
|
| Detection Method: | |
| Confidence: | 1.2 |
| Match: | 1pw4A |
| Description: | Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli |
| Matching Structure (courtesy of the PDB): |
|
