YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24115505, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	41 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24115505, gi|....

Description	E-value	Query Range	Subject Range
EG14372 - entericidin A membrane lipoprotein, antidote entericidin B / Lipoprotein antitoxin to bacteriolytic ... ECNA_ECOL6 - Entericidin A OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ecnA PE=3 SV=1 gi\|12519130, gi\|... - gi\|15804740\|ref\|NP_290781.1\| entericidin A [Escherichia coli O157:H7 EDL933], gi\|12519130\|gb\|AAG5934... EG14372 - entericidin A membrane lipoprotein, antidote entericidin B / Lipoprotein antitoxin to bacteriolytic ... gi\|124531210, gi... - gi\|124531210\|ref\|ZP_01701555.1\| Entericidin EcnAB [Escherichia coli B], gi\|124498729\|gb\|EAY46233.1\| ... gi\|157163614, gi... - gi\|157163614\|ref\|YP_001460932.1\| entericidin A [Escherichia coli HS], gi\|157069294\|gb\|ABV08549.1\| en... gi\|157157665, gi... - gi\|157157665\|ref\|YP_001465648.1\| entericidin A [Escherichia coli E24377A], gi\|157079695\|gb\|ABV19403.... ECNA_ECOL6 - Entericidin A OS=Escherichia coli O6 GN=ecnA PE=3 SV=1 gi\|194423904, gi... - gi\|194437348\|ref\|ZP_03069446.1\| entericidin A [Escherichia coli 101-1], gi\|194423904\|gb\|EDX39893.1\| ... gi\|194417012, gi... - gi\|194434731\|ref\|ZP_03066983.1\| entericidin A [Shigella dysenteriae 1012], gi\|194417012\|gb\|EDX33129.... gi\|208735555, gi... - gi\|208814278\|ref\|ZP_03255607.1\| entericidin B [Escherichia coli O157:H7 str. EC4045], gi\|208735555\|g... gi\|208805996, gi... - gi\|208805996\|ref\|ZP_03248333.1\| entericidin B [Escherichia coli O157:H7 str. EC4206], gi\|208725797\|g... gi\|193065758, gi... - gi\|193065758\|ref\|ZP_03046822.1\| entericidin A [Escherichia coli E22], gi\|192926627\|gb\|EDV81257.1\| en... gi\|190906342, gi... - gi\|191173366\|ref\|ZP_03034895.1\| entericidin A [Escherichia coli F11], gi\|190906342\|gb\|EDV65952.1\| en... gi\|194428932, gi... - gi\|194428932\|ref\|ZP_03061465.1\| entericidin A [Escherichia coli B171], gi\|194412985\|gb\|EDX29274.1\| e... gi\|193067790, gi... - gi\|193067790\|ref\|ZP_03048756.1\| entericidin A [Escherichia coli E110019], gi\|192958765\|gb\|EDV89202.1... gi\|189374873, gi... - gi\|189404613\|ref\|ZP_02809791.2\| entericidin A [Escherichia coli O157:H7 str. EC869], gi\|189374873\|gb... gi\|189368535, gi... - gi\|189403925\|ref\|ZP_02786023.2\| entericidin A [Escherichia coli O157:H7 str. EC4501], gi\|189368535\|g... gi\|191165611, gi... - gi\|191165611\|ref\|ZP_03027451.1\| entericidin A [Escherichia coli B7A], gi\|190904306\|gb\|EDV64015.1\| en... gi\|189375656, gi... - gi\|189406263\|ref\|ZP_02827349.2\| entericidin A [Escherichia coli O157:H7 str. EC508], gi\|189375656\|gb... gi\|189010218, gi... - gi\|189010218\|ref\|ZP_02805586.2\| entericidin A [Escherichia coli O157:H7 str. EC4076], gi\|189001858\|g... gi\|188024661, gi... - gi\|188024661\|ref\|ZP_02773012.2\| entericidin A [Escherichia coli O157:H7 str. EC4113], gi\|188017519\|g... ECNA_ECOLI - Entericidin A precursor - Escherichia coli gi\|189364218, gi... - gi\|189402842\|ref\|ZP_02791433.2\| entericidin A [Escherichia coli O157:H7 str. EC4486], gi\|189364218\|g... gi\|189357441, gi... - gi\|189402120\|ref\|ZP_02780343.2\| entericidin A [Escherichia coli O157:H7 str. EC4401], gi\|189357441\|g... gi\|85676900, gi\|... - gi\|89110869\|ref\|AP_004649.1\| entericidin A membrane lipoprotein, antidote entericidin B [Escherichia... gi\|91075272, gi\|... - gi\|91213698\|ref\|YP_543684.1\| entericidin A [Escherichia coli UTI89], gi\|91075272\|gb\|ABE10153.1\| puta... gi\|218556703, gi... - gi\|218556703\|ref\|YP_002389617.1\| entericidin A [Escherichia coli IAI1], gi\|218363472\|emb\|CAR01126.1\|... gi\|218358960, gi... - gi\|218551418\|ref\|YP_002385210.1\| entericidin A [Escherichia fergusonii ATCC 35469], gi\|218358960\|emb... gi\|218697898, gi... - gi\|218697898\|ref\|YP_002405565.1\| entericidin A [Escherichia coli 55989], gi\|218354630\|emb\|CAV01603.1... gi\|218368077, gi... - gi\|218561308\|ref\|YP_002394221.1\| entericidin A [Escherichia coli S88], gi\|218368077\|emb\|CAR05884.1\| ... gi\|74314637, gi\|... - gi\|74314637\|ref\|YP_313056.1\| entericidin A [Shigella sonnei Ss046], gi\|73858114\|gb\|AAZ90821.1\| putat... gi\|110346099, gi... - gi\|110644507\|ref\|YP_672237.1\| entericidin A [Escherichia coli 536], gi\|110346099\|gb\|ABG72336.1\| puta... gi\|209159808, gi... - gi\|209398408\|ref\|YP_002273693.1\| entericidin B [Escherichia coli O157:H7 str. EC4115], gi\|209159808\|... gi\|82779420, gi\|... - gi\|82779420\|ref\|YP_405769.1\| entericidin A [Shigella dysenteriae Sd197], gi\|81243568\|gb\|ABB64278.1\| ... gi\|208818635, gi... - gi\|208818635\|ref\|ZP_03258955.1\| entericidin B [Escherichia coli O157:H7 str. EC4042], gi\|208738758\|g... gi\|217325121, gi... - gi\|217325121\|ref\|ZP_03441205.1\| entericidin B [Escherichia coli O157:H7 str. TW14588], gi\|217321342\|... gi\|209921639, gi... - gi\|209921639\|ref\|YP_002295723.1\| entericidin A [Escherichia coli SE11], gi\|209914898\|dbj\|BAG79972.1\|... ECNA_ECO57 - Entericidin A OS=Escherichia coli O157:H7 GN=ecnA PE=3 SV=1 gi\|170083596, gi... - gi\|170083596\|ref\|YP_001732916.1\| entericidin A membrane lipoprotein, antidote entericidin B [Escheri... gi\|170021841, gi... - gi\|170021841\|ref\|YP_001726795.1\| entericidin A [Escherichia coli ATCC 8739], gi\|169756769\|gb\|ACA7946... gi\|187775971, gi... - gi\|187775971\|ref\|ZP_02799532.2\| entericidin A [Escherichia coli O157:H7 str. EC4196], gi\|187769972\|g... gi\|187730658, gi... - gi\|187730658\|ref\|YP_001882840.1\| entericidin A [Shigella boydii CDC 3083-94], gi\|187427650\|gb\|ACD069... gi\|242379674, gi... - gi\|251787401\|ref\|YP_003001705.1\| hypothetical protein B21_03980 [Escherichia coli BL21], gi\|24237967... gi\|226840268, gi... - gi\|254037162\|ref\|ZP_04871239.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22684026... gi\|227886808, gi... - gi\|227886808\|ref\|ZP_04004613.1\| entericidin A [Escherichia coli 83972], gi\|227836150\|gb\|EEJ46616.1\| ... gi\|238861036, gi... - gi\|238903256\|ref\|YP_002929052.1\| entericidin A membrane lipoprotein, antidote entericidin B [Escheri... gi\|254595570, gi... - gi\|254796170\|ref\|YP_003081007.1\| entericidin A membrane lipoprotein, antidote entericidin B [Escheri... gi\|253975981, gi... - gi\|254164080\|ref\|YP_003047188.1\| entericidin A membrane lipoprotein, antidote entericidin B [Escheri... gi\|254290830, gi... - gi\|254290830\|ref\|YP_003056578.1\| entericidin A membrane lipoprotein, antidote entericidin B [Escheri...	61.0	[0..1]	[41..1]
gi\|75514908 - gi\|75514908\|ref\|ZP_00737137.1\| COG5510: Predicted small secreted protein [Escherichia coli 53638]	59.0	[0..6]	[41..22]
lcl\|NC_016856.1_... - [gene=ecnA] [protein=putative entericidin A precursor] [protein_id=YP_005240649.1] [location=4593026... gi\|197265149, gi... - gi\|197265149\|ref\|ZP_03165223.1\| putative entericidin A [Salmonella enterica subsp. enterica serovar ... gi\|16422897, gi\|... - gi\|16767584\|ref\|NP_463199.1\| putative entericidin A precursor [Salmonella typhimurium LT2], gi\|16422...	48.0	[0..1]	[41..15]
gi\|56130387, gi\|... - gi\|56416130\|ref\|YP_153205.1\| entericidin A precursor [Salmonella enterica subsp. enterica serovar Pa... gi\|197365056, gi... - gi\|197365056\|ref\|YP_002144693.1\| entericidin A precursor [Salmonella enterica subsp. enterica serova...	47.0	[0..1]	[41..1]
gi\|29144636, gi\|... - gi\|29144636\|ref\|NP_807978.1\| entericidin A precursor [Salmonella enterica subsp. enterica serovar Ty... gi\|25511951, gi\|... - gi\|25511951\|pir\|\|AB1046 entericidin A precursor [imported] - Salmonella enterica subsp. enterica ser... gi\|16763157 - gi\|16763157\|ref\|NP_458774.1\| entericidin A precursor [Salmonella enterica subsp. enterica serovar Ty...	47.0	[0..1]	[41..1]
gi\|224470707, gi... - gi\|224586179\|ref\|YP_002639978.1\| putative entericidin A precursor [Salmonella enterica subsp. enteri... gi\|62130417, gi\|... - gi\|62182784\|ref\|YP_219201.1\| putative entericidin A precursor [Salmonella enterica subsp. enterica s...	47.0	[0..1]	[41..20]

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Predicted Domain #1

Region A:
Residues: [1-41]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKRLIVLVL LASTLLTGCN TACGFGEDIK HLGNSISRAA S

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits