YRC Public Data Repository - Protein Structure Prediction

Protein:	YIDQ_SHIFL
Organism:	Shigella flexneri
Length:	110 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YIDQ_SHIFL.

Description	E-value	Query Range	Subject Range
gi\|226838870, gi... - gi\|254038905\|ref\|ZP_04872957.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22683887... gi\|253322494, gi... - gi\|253771450\|ref\|YP_003034281.1\| protein of unknown function DUF1375 [Escherichia coli BL21(DE3)], g... gi\|7466670, gi\|2... - pir\|\|A65171 o135 protein - Escherichia coli (strain K-12), gi\|290537\|gb\|AAA62040.1\| o135, gi\|155296... gi\|188493928, gi... - gi\|188493928\|ref\|ZP_03001198.1\| conserved hypothetical protein [Escherichia coli 53638], gi\|18848912... gi\|30043259, gi\|... - gi\|30064998\|ref\|NP_839169.1\| hypothetical protein S3995 [Shigella flexneri 2a str. 2457T], gi\|300432... gi\|110807619, gi... - gi\|110807619\|ref\|YP_691139.1\| hypothetical protein SFV_3823 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|209921165, gi... - gi\|209921165\|ref\|YP_002295249.1\| hypothetical protein ECSE_3974 [Escherichia coli SE11], gi\|20991442... gi\|170018076, gi... - gi\|170018076\|ref\|YP_001723030.1\| hypothetical protein EcolC_0015 [Escherichia coli ATCC 8739], gi\|16... gi\|187734170, gi... - gi\|187734170\|ref\|YP_001882472.1\| hypothetical protein SbBS512_E4231 [Shigella boydii CDC 3083-94], g... gi\|16131556, gi\|... - gb\|AAC76711.1\| orf, hypothetical protein; conserved hypothetical protein [Escherichia coli K12], gi... gi\|124529035, gi... - gi\|124529035\|ref\|ZP_01700181.1\| protein of unknown function DUF1375 [Escherichia coli B], gi\|1245001... gi\|157068847, gi... - gi\|157163167\|ref\|YP_001460485.1\| hypothetical protein EcHS_A3900 [Escherichia coli HS], gi\|157068847... gi\|157080570, gi... - gi\|157158540\|ref\|YP_001465172.1\| hypothetical protein EcE24377A_4197 [Escherichia coli E24377A], gi\|... gi\|56480414, gi\|... - gi\|56480414\|ref\|NP_709510.2\| hypothetical protein SF3775 [Shigella flexneri 2a str. 301], gi\|5638396...	192.0	[0..1]	[110..26]
gi\|26110859, gi\|... - gi\|26250429\|ref\|NP_756469.1\| Hypothetical protein yidQ precursor [Escherichia coli CFT073], gi\|26110...	191.0	[0..1]	[110..26]
gi\|25359058, gi\|... - pir\|\|F86053 hypothetical protein yidQ [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|15804287, gi\|... - gi\|15804287\|ref\|NP_290326.1\| hypothetical protein Z5184 [Escherichia coli O157:H7 EDL933], gi\|125185... gi\|13364103, gi\|... - gi\|15833882\|ref\|NP_312655.1\| hypothetical protein ECs4628 [Escherichia coli O157:H7], gi\|13364103\|db... gi\|13364103, gi\|... - gi\|15833882\|ref\|NP_312655.1\| hypothetical protein ECs4628 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|73857481, gi\|... - gi\|74314004\|ref\|YP_312423.1\| hypothetical protein SSON_3639 [Shigella sonnei Ss046], gi\|73857481\|gb\|...	191.0	[0..1]	[110..26]
gi\|82546042, gi\|... - gi\|82546042\|ref\|YP_409989.1\| hypothetical protein SBO_3683 [Shigella boydii Sb227], gi\|81247453\|gb\|A...	190.0	[0..1]	[110..26]
gi\|82779222, gi\|... - gi\|82779222\|ref\|YP_405571.1\| hypothetical protein SDY_4174 [Shigella dysenteriae Sd197], gi\|81243370...	188.0	[0..1]	[110..26]
gi\|237703487, gi... - gi\|237703487\|ref\|ZP_04533968.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|91213211, gi\|... - gi\|91213211\|ref\|YP_543197.1\| hypothetical protein YidQ precursor [Escherichia coli UTI89], gi\|910747... gi\|115515088, gi... - gi\|117625964\|ref\|YP_859287.1\| hypothetical protein APECO1_2769 [Escherichia coli APEC O1], gi\|115515...	186.0	[0..1]	[110..26]
gi\|110644031, gi... - gi\|110644031\|ref\|YP_671761.1\| hypothetical protein ECP_3889 [Escherichia coli 536], gi\|110345623\|gb\|...	184.0	[0..1]	[110..26]
gi\|206710838, gi... - gi\|207859035\|ref\|YP_002245686.1\| hypothetical protein SEN3626 [Salmonella enterica subsp. enterica s... gi\|29144001, gi\|... - gi\|29144001\|ref\|NP_807343.1\| hypothetical protein t3708 [Salmonella enterica subsp. enterica serovar... gi\|16762512 - gi\|16762512\|ref\|NP_458129.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Typhi... gi\|16504817, gi\|... - gi\|25359062\|pir\|\|AD0961 probable lipoprotein STY3968 [imported] - Salmonella enterica subsp. enteric...	178.0	[0..1]	[108..2]
lcl\|NC_016856.1_... - [gene=yidQ] [protein=hypothetical protein] [protein_id=YP_005240076.1] [location=4024328..4024663] gi\|162139525 - gi\|162139525\|ref\|YP_218720.2\| hypothetical protein SC3733 [Salmonella enterica subsp. enterica serov... gi\|16767095, gi\|... - gi\|16767095\|ref\|NP_462710.1\| hypothetical protein STM3810 [Salmonella typhimurium LT2], gi\|16422382\|...	178.0	[0..1]	[108..2]
gi\|56129948, gi\|... - gi\|56415691\|ref\|YP_152766.1\| hypothetical protein SPA3660 [Salmonella enterica subsp. enterica serov... gi\|197364618, gi... - gi\|197364618\|ref\|YP_002144255.1\| hypothetical protein SSPA3418 [Salmonella enterica subsp. enterica ...	175.0	[0..1]	[108..2]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRNVLLAFM ICSGMTLLGG CSSVMSHTGG KEGTYPGTRA SATMIGDDET NWGTKSLAIL  60
   61 DMPFTAVMDT LLLPWDVFRK DSSVRSRVEK SEANAQATNA VIPPARMPDN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	46.769551
Match:	PF07119.3
Description:	No description for PF07119.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits