YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24114548, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	75 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24114548, gi|....

Description	E-value	Query Range	Subject Range
gi\|157159436, gi... - gi\|157159436\|ref\|YP_001464737.1\| hypothetical protein EcE24377A_3748 [Escherichia coli E24377A], gi\|... gi\|188491990, gi... - gi\|188491990\|ref\|ZP_02999260.1\| conserved hypothetical protein [Escherichia coli 53638], gi\|18848718... gi\|226899019, gi... - gi\|237705979\|ref\|ZP_04536460.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|254038427, gi... - gi\|254038427\|ref\|ZP_04872485.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22684005... gi\|91212694, gi\|... - gi\|91212694\|ref\|YP_542680.1\| hypothetical protein UTI89_C3705 [Escherichia coli UTI89], gi\|91074268\|... gi\|26249855, gi\|... - gi\|26249855\|ref\|NP_755895.1\| hypothetical protein c4029 [Escherichia coli CFT073], gi\|26110283\|gb\|AA... gi\|157162744, gi... - gi\|157162744\|ref\|YP_001460062.1\| hypothetical protein EcHS_A3456 [Escherichia coli HS], gi\|157068424...	98.0	[0..1]	[68..1]
gi\|224585185, gi... - gi\|224585185\|ref\|YP_002638984.1\| putative periplasmic protein [Salmonella enterica subsp. enterica s... gi\|197364243, gi... - gi\|197364243\|ref\|YP_002143880.1\| putative periplasmic protein [Salmonella enterica subsp. enterica s... gi\|56129570, gi\|... - gi\|56415313\|ref\|YP_152388.1\| putative periplasmic protein [Salmonella enterica subsp. enterica serov...	89.0	[0..1]	[62..1]
gi\|213999655 - gi\|213999655\|ref\|ZP_03410390.1\| putative periplasmic protein [Salmonella enterica subsp. enterica se... gi\|213853026 - gi\|213853026\|ref\|ZP_03382558.1\| putative periplasmic protein [Salmonella enterica subsp. enterica se... gi\|213977837 - gi\|213977837\|ref\|ZP_03405096.1\| putative periplasmic protein [Salmonella enterica subsp. enterica se... gi\|213619030 - gi\|213619030\|ref\|ZP_03372856.1\| putative periplasmic protein [Salmonella enterica subsp. enterica se... gi\|213649889 - gi\|213649889\|ref\|ZP_03379942.1\| putative periplasmic protein [Salmonella enterica subsp. enterica se... gi\|213428296 - gi\|213428296\|ref\|ZP_03361046.1\| putative periplasmic protein [Salmonella enterica subsp. enterica se... gi\|213583204 - gi\|213583204\|ref\|ZP_03365030.1\| putative periplasmic protein [Salmonella enterica subsp. enterica se... gi\|213162244 - gi\|213162244\|ref\|ZP_03347954.1\| putative periplasmic protein [Salmonella enterica subsp. enterica se... gi\|213419983 - gi\|213419983\|ref\|ZP_03353049.1\| putative periplasmic protein [Salmonella enterica subsp. enterica se... gi\|206710438, gi... - gi\|207858635\|ref\|YP_002245286.1\| hypothetical protein SEN3221 [Salmonella enterica subsp. enterica s... gi\|213022998 - gi\|213022998\|ref\|ZP_03337445.1\| putative periplasmic protein [Salmonella enterica subsp. enterica se... gi\|204319977, gi... - gi\|204931210\|ref\|ZP_03222004.1\| putative periplasmic protein [Salmonella enterica subsp. enterica se... gi\|205354288, gi... - gi\|205354288\|ref\|YP_002228089.1\| hypothetical protein SG3278 [Salmonella enterica subsp. enterica se... gi\|197939477, gi... - gi\|198244961\|ref\|YP_002217357.1\| putative periplasmic protein [Salmonella enterica subsp. enterica s... gi\|238913533 - gi\|238913533\|ref\|ZP_04657370.1\| putative periplasmic protein [Salmonella enterica subsp. enterica se... gi\|199605330, gi... - gi\|200388232\|ref\|ZP_03214844.1\| putative periplasmic protein [Salmonella enterica subsp. enterica se... lcl\|NC_016856.1_... - [gene=yhdU] [protein=hypothetical protein] [protein_id=YP_005239577.1] [location=3571510..3571674] gi\|16766682, gi\|... - gi\|16766682\|ref\|NP_462297.1\| putative periplasmic protein [Salmonella typhimurium LT2], gi\|16421948\|... gi\|197251072, gi... - gi\|197251072\|ref\|YP_002148311.1\| putative periplasmic protein [Salmonella enterica subsp. enterica s... gi\|197243980, gi... - gi\|197265725\|ref\|ZP_03165799.1\| putative periplasmic protein [Salmonella enterica subsp. enterica se... gi\|194458454, gi... - gi\|194472090\|ref\|ZP_03078074.1\| putative periplasmic protein [Salmonella enterica subsp. enterica se... gi\|194736867, gi... - gi\|194736867\|ref\|YP_002116335.1\| putative periplasmic protein [Salmonella enterica subsp. enterica s... gi\|194401401, gi... - gi\|194442738\|ref\|YP_002042643.1\| putative periplasmic protein [Salmonella enterica subsp. enterica s... gi\|194406343, gi... - gi\|194448039\|ref\|YP_002047415.1\| putative periplasmic protein [Salmonella enterica subsp. enterica s... gi\|168463375, gi... - gi\|195633469\|gb\|EDX51883.1\| putative periplasmic protein [Salmonella enterica subsp. enterica serova... gi\|205340886, gi... - gi\|205340886\|gb\|EDZ27650.1\| putative periplasmic protein [Salmonella enterica subsp. enterica serova... gi\|168245209, gi... - gi\|205336029\|gb\|EDZ22793.1\| putative periplasmic protein [Salmonella enterica subsp. enterica serova... gi\|168262588, gi... - gi\|205348504\|gb\|EDZ35135.1\| putative periplasmic protein [Salmonella enterica subsp. enterica serova... gi\|168233974, gi... - gi\|205332013\|gb\|EDZ18777.1\| putative periplasmic protein [Salmonella enterica subsp. enterica serova... gi\|168239416, gi... - gi\|197287882\|gb\|EDY27270.1\| putative periplasmic protein [Salmonella enterica subsp. enterica serova... gi\|205322538, gi... - gi\|205322538\|gb\|EDZ10377.1\| putative periplasmic protein [Salmonella enterica subsp. enterica serova... gi\|205328105, gi... - gi\|205328105\|gb\|EDZ14869.1\| putative periplasmic protein [Salmonella enterica subsp. enterica serova... gi\|161616412, gi... - gi\|161616412\|ref\|YP_001590377.1\| hypothetical protein SPAB_04221 [Salmonella enterica subsp. enteric...	88.0	[0..10]	[62..1]
gi\|62129528, gi\|... - gi\|62181895\|ref\|YP_218312.1\| putative periplasmic protein [Salmonella enterica subsp. enterica serov...	88.0	[0..1]	[62..1]
EG12832 - putative membrane protein / Function unknown gi\|83584631 - gi\|83584631\|ref\|ZP_00923299.1\| hypothetical protein Ecol1_01004160 [Escherichia coli 101-1] gi\|75188061 - gi\|75188061\|ref\|ZP_00701328.1\| hypothetical protein EcolE_01001303 [Escherichia coli E24377A] gi\|75197205 - gi\|75197205\|ref\|ZP_00707275.1\| hypothetical protein EcolH_01003019 [Escherichia coli HS] gi\|75208483 - gi\|75208483\|ref\|ZP_00708805.1\| hypothetical protein EcolB_01004280 [Escherichia coli B171] gi\|75214926 - gi\|75214926\|ref\|ZP_00713403.1\| hypothetical protein EcolE1_01004442 [Escherichia coli E110019] YHDU_ECOL6 - Uncharacterized protein yhdU OS=Escherichia coli O6 GN=yhdU PE=4 SV=1 YHDU_ECO57 - Uncharacterized protein YhdU OS=Escherichia coli O157:H7 GN=yhdU PE=4 SV=1 YHDU_ECOLI - Hypothetical protein yhdU - Escherichia coli EG12832 - putative membrane protein / Function unknown gi\|227887989, gi... - gi\|227887989\|ref\|ZP_04005794.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783538... gi\|238902362, gi... - gi\|238902362\|ref\|YP_002928158.1\| hypothetical protein BWG_2962 [Escherichia coli BW2952], gi\|2388626... gi\|242378797, gi... - gi\|251786524\|ref\|YP_003000828.1\| hypothetical protein B21_03072 [Escherichia coli BL21], gi\|24237879... gi\|253979255, gi... - gi\|254289948\|ref\|YP_003055696.1\| predicted membrane protein [Escherichia coli BL21(DE3)], gi\|2539792... gi\|254163198, gi... - gi\|254163198\|ref\|YP_003046306.1\| predicted membrane protein [Escherichia coli B str. REL606], gi\|253... gi\|254594606, gi... - gi\|254795206\|ref\|YP_003080043.1\| predicted membrane protein [Escherichia coli O157:H7 str. TW14359],... gi\|124528537, gi... - gi\|124528537\|ref\|ZP_01699826.1\| conserved hypothetical protein [Escherichia coli B], gi\|124500560\|gb... gi\|218691554, gi... - gi\|218691554\|ref\|YP_002399766.1\| hypothetical protein ECED1_3922 [Escherichia coli ED1a], gi\|2184291... gi\|218367101, gi... - gi\|218560332\|ref\|YP_002393245.1\| hypothetical protein ECS88_3648 [Escherichia coli S88], gi\|21836710... gi\|218372022, gi... - gi\|218702036\|ref\|YP_002409665.1\| hypothetical protein ECIAI39_3763 [Escherichia coli IAI39], gi\|2183... gi\|218696962, gi... - gi\|218696962\|ref\|YP_002404629.1\| hypothetical protein EC55989_3677 [Escherichia coli 55989], gi\|2183... gi\|13363608, gi\|... - gi\|15833389\|ref\|NP_312162.1\| putative transport protein [Escherichia coli O157:H7 str. Sakai], gi\|13... gi\|218433974, gi... - gi\|218706877\|ref\|YP_002414396.1\| hypothetical protein ECUMN_3737 [Escherichia coli UMN026], gi\|21843... gi\|110345099, gi... - gi\|110643507\|ref\|YP_671237.1\| hypothetical protein ECP_3356 [Escherichia coli 536], gi\|110345099\|gb\|... YHDU_ECOL6 - Uncharacterized protein YhdU OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yhdU ... gi\|170082791, gi... - gi\|170082791\|ref\|YP_001732111.1\| hypothetical protein ECDH10B_3438 [Escherichia coli str. K-12 subst... gi\|169753422, gi... - gi\|170018494\|ref\|YP_001723448.1\| hypothetical protein EcolC_0443 [Escherichia coli ATCC 8739], gi\|16... gi\|215488570, gi... - gi\|215488570\|ref\|YP_002331001.1\| predicted membrane protein [Escherichia coli O127:H6 str. E2348/69]... gi\|195940007 - gi\|195940007\|ref\|ZP_03085389.1\| hypothetical protein EscherichcoliO157_27032 [Escherichia coli O157:... gi\|15803797, gi\|... - gi\|15803797\|ref\|NP_289831.1\| hypothetical protein Z4623 [Escherichia coli O157:H7 EDL933], gi\|125178... gi\|75227557 - gi\|75227557\|ref\|ZP_00714314.1\| hypothetical protein EcolB7_01004035 [Escherichia coli B7A] gi\|75237876 - gi\|75237876\|ref\|ZP_00721887.1\| hypothetical protein EcolF_01003682 [Escherichia coli F11] gi\|75255432 - gi\|75255432\|ref\|ZP_00727240.1\| hypothetical protein EcolE2_01004500 [Escherichia coli E22] gi\|75511209 - gi\|75511209\|ref\|ZP_00733916.1\| hypothetical protein Ecol5_01004469 [Escherichia coli 53638] gi\|89110023, gi\|... - gi\|89110023\|ref\|AP_003803.1\| predicted membrane protein [Escherichia coli str. K-12 substr. W3110], ...	83.0	[0..10]	[68..1]
gi\|218362595, gi... - gi\|218555827\|ref\|YP_002388740.1\| hypothetical protein ECIAI1_3406 [Escherichia coli IAI1], gi\|218362... gi\|81247045, gi\|... - gi\|82545634\|ref\|YP_409581.1\| hypothetical protein SBO_3257 [Shigella boydii Sb227], gi\|81247045\|gb\|A...	82.0	[0..10]	[68..1]
gi\|73857269, gi\|... - gi\|74313792\|ref\|YP_312211.1\| hypothetical protein SSON_3404 [Shigella sonnei Ss046], gi\|73857269\|gb\|...	80.0	[0..10]	[68..1]

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Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKHAQAQVM IRKYWWLVVF AVFVFLFDTL LMQWIELLTT ETDKCRNMNS VNPLKLVNCD  60
   61 ELNFQDRMSV MTPTY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits