YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24053277, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	292 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24053277, gi|....

Description	E-value	Query Range	Subject Range
XDH_DROPS - (P22811) Xanthine dehydrogenase (EC 1.17.1.4) (XD) (Protein rosy locus)	317.0	[0..3]	[287..238]
gi\|8831 - gi\|8831\|emb\|CAA68409.1\| xanthine dehydrogenase [Drosophila melanogaster]	317.0	[0..3]	[284..230]
gi\|33391854 - gi\|33391854\|gb\|AAQ17526.1\| xanthine dehydrogenase [Drosophila simulans]	317.0	[0..3]	[284..216]
gi\|24985994, gi\|... - gi\|26990969\|ref\|NP_746394.1\| xanthine dehydrogenase, XdhA subunit [Pseudomonas putida KT2440], gi\|24...	315.0	[0..10]	[282..202]
gi\|30042453, gi\|... - gi\|30064196\|ref\|NP_838367.1\| xanthine dehydrogenase subunit XdhB [Shigella flexneri 2a str. 2457T], ...	315.0	[0..1]	[292..1]
gi\|33391864 - gi\|33391864\|gb\|AAQ17531.1\| xanthine dehydrogenase [Drosophila eugracilis]	315.0	[0..3]	[288..216]
gi\|75515349, gi\|... - gi\|75515349\|ref\|ZP_00737533.1\| COG1319: Aerobic-type carbon monoxide dehydrogenase, middle subunit C... gi\|89109647, gi\|... - gi\|89109647\|ref\|AP_003427.1\| xanthine dehydrogenase, FAD-binding subunit [Escherichia coli str. K-12... gi\|238901993, gi... - gi\|238901993\|ref\|YP_002927789.1\| xanthine dehydrogenase, FAD-binding subunit [Escherichia coli BW295... gi\|242378400, gi... - gi\|251786127\|ref\|YP_003000431.1\| hypothetical protein B21_02662 [Escherichia coli BL21], gi\|24237840... gi\|83587737, gi\|... - gi\|83587737\|ref\|ZP_00926364.1\| COG1319: Aerobic-type carbon monoxide dehydrogenase, middle subunit C... gi\|253772292, gi... - gi\|254289540\|ref\|YP_003055288.1\| xanthine dehydrogenase, FAD-binding subunit [Escherichia coli BL21(... EG13050 - xanthine dehydrogenase, FAD-binding subunit / Xanthine dehydrogenase FAD-binding subunit; involved i... gi\|157162328, gi... - gi\|75196820\|ref\|ZP_00706890.1\| COG1319: Aerobic-type carbon monoxide dehydrogenase, middle subunit C... gi\|253974681, gi... - gi\|254162780\|ref\|YP_003045888.1\| xanthine dehydrogenase, FAD-binding subunit [Escherichia coli B str... gi\|75212519, gi\|... - gi\|75212519\|ref\|ZP_00712543.1\| COG1319: Aerobic-type carbon monoxide dehydrogenase, middle subunit C... gi\|75230841, gi\|... - gi\|75230841\|ref\|ZP_00717299.1\| COG1319: Aerobic-type carbon monoxide dehydrogenase, middle subunit C... gi\|193070561, gi... - gi\|75234596\|ref\|ZP_00718927.1\| COG1319: Aerobic-type carbon monoxide dehydrogenase, middle subunit C... gi\|75258467, gi\|... - gi\|75258467\|ref\|ZP_00729889.1\| COG1319: Aerobic-type carbon monoxide dehydrogenase, middle subunit C... gi\|110616336, gi... - gi\|110806788\|ref\|YP_690308.1\| xanthine dehydrogenase subunit XdhB [Shigella flexneri 5 str. 8401], g... gi\|124526226, gi... - gi\|124526226\|ref\|ZP_01698231.1\| molybdopterin dehydrogenase, FAD-binding [Escherichia coli B], gi\|12... XDHB_ECOLI - Xanthine dehydrogenase FAD-binding subunit (EC 1.17.1.4) - Escherichia coli gi\|169753814, gi... - gi\|170018886\|ref\|YP_001723840.1\| xanthine dehydrogenase subunit XdhB [Escherichia coli ATCC 8739], g... gi\|169890265, gi... - gi\|170082430\|ref\|YP_001731750.1\| xanthine dehydrogenase, FAD-binding subunit [Escherichia coli str. ... EG13050 - xanthine dehydrogenase, FAD-binding subunit / Xanthine dehydrogenase FAD-binding subunit; involved i... gi\|209920322, gi... - gi\|209920322\|ref\|YP_002294406.1\| xanthine dehydrogenase subunit XdhB [Escherichia coli SE11], gi\|209... gi\|218555416, gi... - gi\|218555416\|ref\|YP_002388329.1\| xanthine dehydrogenase subunit XdhB [Escherichia coli IAI1], gi\|218... gi\|218353195, gi... - gi\|218696463\|ref\|YP_002404130.1\| xanthine dehydrogenase subunit XdhB [Escherichia coli 55989], gi\|21...	314.0	[0..1]	[292..1]

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Predicted Domain #1

Region A:
Residues: [1-292]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDFASYHRA ATLADAINLL ADNPQAKLLA GGTDVLIQLH HHNDRYRHIV DIHNLAELRG  60
   61 ITLAEDGSLR IGSATTFTQL IEDPITQRHL PALCAAATFI AGPQIRNVAT YGGNICNGAT 120
  121 SADSATPTLI YDAKLEIHSP RGVRFVPING FHTGPGKVSL EHDEILVAFH FPPQPKEHAG 180
  181 SAHFKYAMRD AMDISTIGCA AHCRLDNGNF SELRLAFGVA APTPIRCQHA EQTAQNAPLN 240
  241 LQTLEAISES VLQDVAPHSS WRASKEFRLH LIQTMTKKVI SEAVAAAGGK LQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	73.0
Match:	1ffvC
Description:	Carbon monoxide (CO) dehydrogenase flavoprotein, C-terminal domain; Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.21136912606491	bayes_pls_golite062009
oxidoreductase activity	0.296063918808454	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: