YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24053178, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	149 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24053178, gi|....

Description	E-value	Query Range	Subject Range
gi\|26109570, gi\|... - gi\|26249163\|ref\|NP_755203.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Escherichia coli CFT0... gi\|91073700, gi\|... - gi\|91212126\|ref\|YP_542112.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Escherichia coli UTI8... gi\|237706612, gi... - gi\|237706612\|ref\|ZP_04537093.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689...	221.0	[0..1]	[149..1]
gi\|121586547, gi... - gi\|121586547\|ref\|ZP_01676333.1\| 6-pyruvoyl tetrahydrobiopterin synthase, putative [Vibrio cholerae 2... gi\|124116688, gi... - gi\|153212310\|ref\|ZP_01948098.1\| 6-pyruvoyl tetrahydrobiopterin synthase, putative [Vibrio cholerae 1... gi\|153222955, gi... - gi\|153222955\|ref\|ZP_01953562.1\| 6-pyruvoyl tetrahydrobiopterin synthase, putative [Vibrio cholerae M... gi\|153820104, gi... - gi\|153820104\|ref\|ZP_01972771.1\| 6-pyruvoyl tetrahydrobiopterin synthase, putative [Vibrio cholerae N... gi\|153823525, gi... - gi\|229511215\|ref\|ZP_04400694.1\| queuosine biosynthesis QueD PTPS-I [Vibrio cholerae B33], gi\|2293511... gi\|125617912, gi... - gi\|75829229\|ref\|ZP_00758540.1\| COG0720: 6-pyruvoyl-tetrahydropterin synthase [Vibrio cholerae MO10],... gi\|197751937, gi... - gi\|254286604\|ref\|ZP_04961560.1\| 6-pyruvoyl tetrahydrobiopterin synthase, putative [Vibrio cholerae A... gi\|147674632, gi... - gi\|75826689\|ref\|ZP_00756124.1\| COG0720: 6-pyruvoyl-tetrahydropterin synthase [Vibrio cholerae O395],... gi\|148874477, gi... - gi\|153830037\|ref\|ZP_01982704.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Vibrio cholerae 62... gi\|254226643, gi... - gi\|75817726\|ref\|ZP_00748032.1\| COG0720: 6-pyruvoyl-tetrahydropterin synthase [Vibrio cholerae V51], ... gi\|149739600, gi... - gi\|153826588\|ref\|ZP_01979255.1\| 6-pyruvoyl tetrahydrobiopterin synthase, putative [Vibrio cholerae M... gi\|75814393, gi\|... - gi\|75814393\|ref\|ZP_00744988.1\| COG0720: 6-pyruvoyl-tetrahydropterin synthase [Vibrio cholerae V52], ... gi\|227009358, gi... - gi\|227081470\|ref\|YP_002810021.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Vibrio cholerae M... gi\|229357338, gi... - gi\|229505115\|ref\|ZP_04394625.1\| queuosine biosynthesis QueD PTPS-I [Vibrio cholerae BX 330286], gi\|2... gi\|229515675, gi... - gi\|229515675\|ref\|ZP_04405134.1\| queuosine biosynthesis QueD PTPS-I [Vibrio cholerae TMA 21], gi\|2293... gi\|229518333, gi... - gi\|229518333\|ref\|ZP_04407777.1\| queuosine biosynthesis QueD PTPS-I [Vibrio cholerae RC9], gi\|2293450... gi\|229529619, gi... - gi\|229529619\|ref\|ZP_04419009.1\| queuosine biosynthesis QueD PTPS-I [Vibrio cholerae 12129(1)], gi\|22... gi\|9655787, gi\|1... - gi\|9655787\|gb\|AAF94458.1\| 6-pyruvoyl tetrahydrobiopterin synthase, putative [Vibrio cholerae O1 biov... gi\|11279793 - pir\|\|G82217 probable 6-pyruvoyl tetrahydrobiopterin synthase VC1299 [imported] - Vibrio cholerae (st...	179.0	[0..28]	[149..1]
gi\|9948737, gi\|1... - gi\|9948737\|gb\|AAG06054.1\|AE004695_7 probable 6-pyruvoyl tetrahydrobiopterin synthase [Pseudomonas ae... gi\|152989185, gi... - gi\|94412899\|ref\|ZP_01292797.1\| hypothetical protein PaerP_01005313 [Pseudomonas aeruginosa PA7], gi\|... gi\|107102187 - gi\|107102187\|ref\|ZP_01366105.1\| hypothetical protein PaerPA_01003238 [Pseudomonas aeruginosa PACS2] gi\|11350848 - pir\|\|H83311 probable 6-pyruvoyl tetrahydrobiopterin synthase PA2666 [imported] - Pseudomonas aerugin... gi\|116050653, gi... - gi\|32037704\|ref\|ZP_00135976.1\| COG0720: 6-pyruvoyl-tetrahydropterin synthase [Pseudomonas aeruginosa... gi\|194546633, gi... - gi\|84320636\|ref\|ZP_00969009.1\| COG0720: 6-pyruvoyl-tetrahydropterin synthase [Pseudomonas aeruginosa... gi\|218771397, gi... - gi\|218891172\|ref\|YP_002440038.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Pseudomonas aerug... gi\|84326995, gi\|... - gi\|84326995\|ref\|ZP_00975019.1\| COG0720: 6-pyruvoyl-tetrahydropterin synthase [Pseudomonas aeruginosa...	179.0	[0..32]	[149..1]
gi\|115364038, gi... - gi\|115378962\|ref\|ZP_01466095.1\| 6-pyruvoyl tetrahydropterin synthase family [Stigmatella aurantiaca ...	178.0	[0..33]	[149..657]
gi\|85058493, gi\|... - gi\|85058493\|ref\|YP_454195.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Sodalis glossinidius ...	177.0	[0..30]	[149..1]
gi\|71557763, gi\|... - gi\|71737210\|ref\|YP_275300.1\| 6-pyruvoyl tetrahydrobiopterin synthase, putative [Pseudomonas syringae...	177.0	[0..32]	[149..1]
gi\|104781054, gi... - gi\|95110041\|emb\|CAK14746.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase SscR [Pseudomonas entom... gi\|95110041 - gi\|95110041\|emb\|CAK14746.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase SscR [Pseudomonas entom...	176.0	[0..32]	[149..1]
gi\|46187340, gi\|... - gi\|66046444\|ref\|YP_236285.1\| putative 6-pyruvoyl tetrahydropterin synthase [Pseudomonas syringae pv....	176.0	[0..32]	[149..1]
gi\|74313335, gi\|... - gi\|74313335\|ref\|YP_311754.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Shigella sonnei Ss046... gi\|81246478, gi\|... - gi\|82545067\|ref\|YP_409014.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Shigella boydii Sb227... gi\|75256972 - gi\|75256972\|ref\|ZP_00728548.1\| COG0720: 6-pyruvoyl-tetrahydropterin synthase [Escherichia coli E22] gi\|75512328, gi\|... - gi\|75512328\|ref\|ZP_00734880.1\| COG0720: 6-pyruvoyl-tetrahydropterin synthase [Escherichia coli 53638... gi\|89109552, gi\|... - gi\|89109552\|ref\|AP_003332.1\| 6-pyruvoyl tetrahydrobiopterin synthase [Escherichia coli str. K-12 sub... EG13120 - 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) / 6-carboxy-5,6,7,8-tetrahydropterin synthase; queuos... gi\|75176372, gi\|... - gi\|75176372\|ref\|ZP_00696516.1\| COG0720: 6-pyruvoyl-tetrahydropterin synthase [Shigella boydii BS512]... EG13120 - 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) / 6-carboxy-5,6,7,8-tetrahydropterin synthase; queuos... gi\|75187493, gi\|... - gi\|75187493\|ref\|ZP_00700760.1\| COG0720: 6-pyruvoyl-tetrahydropterin synthase [Escherichia coli E2437... gi\|12517226, gi\|... - gi\|15803283\|ref\|NP_289315.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Escherichia coli O157... gi\|83585583 - gi\|83585583\|ref\|ZP_00924226.1\| COG0720: 6-pyruvoyl-tetrahydropterin synthase [Escherichia coli 101-1... gi\|75230024 - gi\|75230024\|ref\|ZP_00716534.1\| COG0720: 6-pyruvoyl-tetrahydropterin synthase [Escherichia coli B7A] gi\|75235634 - gi\|75235634\|ref\|ZP_00719808.1\| COG0720: 6-pyruvoyl-tetrahydropterin synthase [Escherichia coli E1100... gi\|157162215, gi... - gi\|75196736\|ref\|ZP_00706806.1\| COG0720: 6-pyruvoyl-tetrahydropterin synthase [Escherichia coli HS], ... gi\|124498523, gi... - gi\|124531509\|ref\|ZP_01701763.1\| putative 6-pyruvoyl tetrahydropterin synthase [Escherichia coli B], ... gi\|75210975 - gi\|75210975\|ref\|ZP_00711099.1\| COG0720: 6-pyruvoyl-tetrahydropterin synthase [Escherichia coli B171] QUED_SHIFL - 6-carboxy-5,6,7,8-tetrahydropterin synthase OS=Shigella flexneri GN=queD PE=3 SV=1 gi\|218547715, gi... - gi\|218547715\|ref\|YP_002381506.1\| 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) [Escherichia ferguso... gi\|13363091, gi\|... - gi\|15832874\|ref\|NP_311647.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Escherichia coli O157... gi\|169890174, gi... - gi\|170082339\|ref\|YP_001731659.1\| 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) [Escherichia coli st... gi\|238901902, gi... - gi\|238901902\|ref\|YP_002927698.1\| 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) [Escherichia coli BW... gi\|218353096, gi... - gi\|218696364\|ref\|YP_002404031.1\| 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) [Escherichia coli 55... gi\|242378313, gi... - gi\|251786040\|ref\|YP_003000344.1\| hypothetical protein B21_02573 [Escherichia coli BL21], gi\|24237831... gi\|218362081, gi... - gi\|218555313\|ref\|YP_002388226.1\| 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) [Escherichia coli IA... gi\|254289450, gi... - gi\|254289450\|ref\|YP_003055198.1\| 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) [Escherichia coli BL... gi\|253974592, gi... - gi\|254162691\|ref\|YP_003045799.1\| 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) [Escherichia coli B ... gi\|254594106, gi... - gi\|254794706\|ref\|YP_003079543.1\| 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) [Escherichia coli O1... QUED_ECO57 - 6-carboxy-5,6,7,8-tetrahydropterin synthase OS=Escherichia coli O157:H7 GN=queD PE=3 SV=1 PTPS_ECOLI - Putative 6-pyruvoyl tetrahydrobiopterin synthase (EC 4.2.3.12) (PTPS) (PTP synthase) - Escherichia c... gi\|170018989, gi... - gi\|170018989\|ref\|YP_001723943.1\| 6-pyruvoyl tetrahydropterin synthase [Escherichia coli ATCC 8739], ...	175.0	[0..29]	[149..1]
gi\|195633519, gi... - gi\|195633519\|gb\|EDX51933.1\| queuosine biosynthesis protein QueD [Salmonella enterica subsp. enterica... gi\|205349073, gi... - gi\|205349073\|gb\|EDZ35704.1\| queuosine biosynthesis protein QueD [Salmonella enterica subsp. enterica... gi\|205337963, gi... - gi\|205337963\|gb\|EDZ24727.1\| 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella enterica subsp. ente... gi\|197290790, gi... - gi\|197290790\|gb\|EDY30144.1\| queuosine biosynthesis protein QueD [Salmonella enterica subsp. enterica... gi\|194472851, gi... - gi\|194472851\|ref\|ZP_03078835.1\| queuosine biosynthesis protein QueD [Salmonella enterica subsp. ente... gi\|194449237, gi... - gi\|194449237\|ref\|YP_002046907.1\| queuosine biosynthesis protein QueD [Salmonella enterica subsp. ent... gi\|194445925, gi... - gi\|194445925\|ref\|YP_002042191.1\| 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella enterica subsp.... gi\|168820343, gi... - gi\|205342824\|gb\|EDZ29588.1\| 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella enterica subsp. ente... gi\|168231030, gi... - gi\|205334410\|gb\|EDZ21174.1\| 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella enterica subsp. ente... gi\|167993193, gi... - gi\|205328718\|gb\|EDZ15482.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella enterica su... gi\|205324819, gi... - gi\|205324819\|gb\|EDZ12658.1\| queuosine biosynthesis protein QueD [Salmonella enterica subsp. enterica... gi\|160863344, gi... - gi\|161501997\|ref\|YP_001569109.1\| hypothetical protein SARI_00013 [Salmonella enterica subsp. arizona... gi\|213422336 - gi\|213422336\|ref\|ZP_03355402.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella enteric... gi\|213163459 - gi\|213163459\|ref\|ZP_03349169.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella enteric... gi\|213022665 - gi\|213022665\|ref\|ZP_03337112.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella enteric... lcl\|NC_016856.1_... - [gene=ptpS] [protein=putative 6-pyruvoyl tetrahydrobiopterin synthase] [protein_id=YP_005239063.1] [... gi\|207858209, gi... - gi\|207858209\|ref\|YP_002244860.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella enteri... gi\|213648293 - gi\|213648293\|ref\|ZP_03378346.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella enteric... gi\|213615974 - gi\|213615974\|ref\|ZP_03371800.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella enteric... gi\|213581715 - gi\|213581715\|ref\|ZP_03363541.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella enteric... gi\|213424927 - gi\|213424927\|ref\|ZP_03357677.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella enteric... gi\|16766255, gi\|... - gi\|16766255\|ref\|NP_461870.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella typhimuriu... gi\|62129083, gi\|... - gi\|62181450\|ref\|YP_217867.1\| putative synthase [Salmonella enterica subsp. enterica serovar Cholerae... gi\|197363822, gi... - gi\|197363822\|ref\|YP_002143459.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella enteri... gi\|29143205, gi\|... - gi\|29143205\|ref\|NP_806547.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella enterica s... gi\|56129151, gi\|... - gi\|56414894\|ref\|YP_151969.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella enterica s... gi\|197263107, gi... - gi\|197263107\|ref\|ZP_03163181.1\| queuosine biosynthesis protein QueD [Salmonella enterica subsp. ente... gi\|197211080, gi... - gi\|197247377\|ref\|YP_002147848.1\| queuosine biosynthesis protein QueD [Salmonella enterica subsp. ent... gi\|16504022, gi\|... - gi\|25321857\|pir\|\|AH0858 probable 6-pyruvoyltetrahydropterin synthase (EC 4.2.3.12) [imported] - Salm... gi\|194738118, gi... - gi\|194738118\|ref\|YP_002115898.1\| queuosine biosynthesis protein QueD [Salmonella enterica subsp. ent... gi\|205353889, gi... - gi\|205353889\|ref\|YP_002227690.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella enteri... gi\|204928214, gi... - gi\|204928214\|ref\|ZP_03219414.1\| queuosine biosynthesis protein QueD [Salmonella enterica subsp. ente... gi\|238909721 - gi\|238909721\|ref\|ZP_04653558.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella enteric... gi\|16761721 - gi\|16761721\|ref\|NP_457338.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella enterica s... gi\|200388847, gi... - gi\|200388847\|ref\|ZP_03215459.1\| queuosine biosynthesis protein QueD [Salmonella enterica subsp. ente... gi\|197939059, gi... - gi\|198244543\|ref\|YP_002216916.1\| 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella enterica subsp.... gi\|224469255, gi... - gi\|224584728\|ref\|YP_002638526.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella enteri... gi\|214003254 - gi\|214003254\|ref\|ZP_03413989.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella enteric... gi\|213852989 - gi\|213852989\|ref\|ZP_03382521.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Salmonella enteric...	175.0	[0..30]	[149..1]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNKVVLDNA KKQPFRYSTA VLSSCREIMM STTLFKDFTF EAAHRLPHVP EGHKCGRLHG  60
   61 HSFMVRLEIT GEVDPHTGWI IDFAELKAAF KPTYERLDHH YLNDIPGLEN PTSEVLAKWI 120
  121 WDQVKPVVPL LSAVMVKETC TAGCIYRGE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.0
Match:	2obaA
Description:	No description for 2obaA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits