YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24051806, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	151 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24051806, gi|....

Description	E-value	Query Range	Subject Range
gi\|218705234, gi... - gi\|218705234\|ref\|YP_002412753.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA... gi\|145494 - gi\|145494\|gb\|AAA23556.1\| PTS enzyme III cel	145.0	[0..36]	[151..1]
PTQA_SHIFL - N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIA component OS=Shigella flexneri GN=chb... gi\|1742833, gi\|8... - gi\|89108575\|ref\|AP_002355.1\| N,N'-diacetylchitobiose-specific enzyme IIA component of PTS [Escherich... gi\|30041245, gi\|... - gi\|30062996\|ref\|NP_837167.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA [Sh... gi\|13361909, gi\|... - gi\|15831696\|ref\|NP_310469.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA [Es... PTQA_ECOL6 - N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIA component OS=Escherichia coli O6:H1 (... PTQA_ECOL6 - N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIA component OS=Escherichia coli O6 GN=c... gi\|110641856, gi... - gi\|110641856\|ref\|YP_669586.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA [E... EG10142 - N,N'-diacetylchitobiose-specific enzyme IIA component of PTS / PTS Enzyme IIA(Chb), N,N'-diacetylchi... EG10142 - N,N'-diacetylchitobiose-specific enzyme IIA component of PTS / PTS Enzyme IIA(Chb), N,N'-diacetylchi... PTQA_ECO57 - N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIA component OS=Escherichia coli O157:H7... gi\|15802147, gi\|... - gi\|15802147\|ref\|NP_288169.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA [Es... gi\|254793354, gi... - gi\|254793354\|ref\|YP_003078191.1\| N,N'-diacetylchitobiose-specific enzyme IIA component of PTS [Esche... gi\|253973696, gi... - gi\|254161795\|ref\|YP_003044903.1\| N,N'-diacetylchitobiose-specific enzyme IIA component of PTS [Esche... gi\|253324354, gi... - gi\|254288583\|ref\|YP_003054331.1\| N,N'-diacetylchitobiose-specific enzyme IIA component of PTS [Esche... gi\|251785184, gi... - gi\|251785184\|ref\|YP_002999488.1\| hypothetical protein B21_01693 [Escherichia coli BL21], gi\|24237745... gi\|56479914, gi\|... - gi\|56479914\|ref\|NP_707375.2\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA [Sh... gi\|238900950, gi... - gi\|238900950\|ref\|YP_002926746.1\| N,N'-diacetylchitobiose-specific enzyme IIA component of PTS [Esche... gi\|227837414, gi... - gi\|227885841\|ref\|ZP_04003646.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA ... gi\|75227703, gi\|... - gi\|75227703\|ref\|ZP_00714438.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ... gi\|75236795 - gi\|75236795\|ref\|ZP_00720866.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ... gi\|75195806 - gi\|75195806\|ref\|ZP_00705876.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ... gi\|194413456, gi... - gi\|75210223\|ref\|ZP_00710391.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ... gi\|188492461, gi... - gi\|75513768\|ref\|ZP_00736144.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ... gi\|74311945, gi\|... - gi\|74311945\|ref\|YP_310364.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA [Sh... gi\|75241389, gi\|... - gi\|75241389\|ref\|ZP_00725240.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ... gi\|75256138, gi\|... - gi\|75256138\|ref\|ZP_00727834.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ... gi\|83586035, gi\|... - gi\|83586035\|ref\|ZP_00924673.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ... gi\|75190769, gi\|... - gi\|75190769\|ref\|ZP_00704036.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ... gi\|83569660 - gi\|83569660\|ref\|ZP_00921111.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ... gi\|170518575, gi... - gi\|170680857\|ref\|YP_001743513.1\| PTS system, N,N'-diacetylchitobiose-specific EIIA component [Escher... gi\|195937420 - gi\|195937420\|ref\|ZP_03082802.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA ... gi\|208810630, gi... - gi\|208810630\|ref\|ZP_03252506.1\| PTS system, N,N'-diacetylchitobiose-specific EIIA component [Escheri... PTCA_ECOLI, PTQA... - N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIA component (EC 2.7.1.-) (PTS system N,... gi\|209919097, gi... - gi\|209919097\|ref\|YP_002293181.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA... gi\|215265025, gi... - gi\|215486953\|ref\|YP_002329384.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA... gi\|217317964, gi... - gi\|217328617\|ref\|ZP_03444698.1\| PTS system, N,N'-diacetylchitobiose-specific EIIA component [Escheri... gi\|218554302, gi... - gi\|218554302\|ref\|YP_002387215.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA... gi\|218369683, gi... - gi\|218699697\|ref\|YP_002407326.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA... gi\|168749446, gi... - gi\|188016270\|gb\|EDU54392.1\| PTS system, N,N'-diacetylchitobiose-specific EIIA component [Escherichia... gi\|189367479, gi... - gi\|189367479\|gb\|EDU85895.1\| PTS system, N,N'-diacetylchitobiose-specific EIIA component [Escherichia... gi\|168770500, gi... - gi\|189360645\|gb\|EDU79064.1\| PTS system, N,N'-diacetylchitobiose-specific EIIA component [Escherichia... gi\|189371917, gi... - gi\|189371917\|gb\|EDU90333.1\| PTS system, N,N'-diacetylchitobiose-specific EIIA component [Escherichia... gi\|170081393, gi... - gi\|170081393\|ref\|YP_001730713.1\| N,N'-diacetylchitobiose-specific enzyme IIA component of PTS [Esche...	145.0	[0..36]	[151..1]
gi\|115513032, gi... - gi\|117623908\|ref\|YP_852821.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA [E... gi\|91072524, gi\|... - gi\|91210950\|ref\|YP_540936.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA [Es... gi\|218427241, gi... - gi\|218689677\|ref\|YP_002397889.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA... gi\|218558604, gi... - gi\|218558604\|ref\|YP_002391517.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA... gi\|237705685, gi... - gi\|237705685\|ref\|ZP_04536166.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA ... gi\|145500 - gi\|145500\|gb\|AAA23559.1\| PTS enzyme III cel	144.0	[0..36]	[151..1]
gi\|77978444 - gi\|77978444\|ref\|ZP_00833873.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ...	144.0	[0..31]	[150..10]
gi\|205341557, gi... - gi\|205341557\|gb\|EDZ28321.1\| N,n'-diacetylchitobiose-specific phosphotransferase enzyme iiacomponent ... gi\|194444735, gi... - gi\|194444735\|ref\|YP_002040574.1\| N,n'-diacetylchitobiose-specific phosphotransferase enzyme iiacompo... gi\|168263867, gi... - gi\|205347624\|gb\|EDZ34255.1\| N,n'-diacetylchitobiose-specific phosphotransferase enzyme iiacomponent ... gi\|195634000, gi... - gi\|195634000\|gb\|EDX52352.1\| N,n'-diacetylchitobiose-specific phosphotransferase enzyme iia component... gi\|168238984, gi... - gi\|197288295\|gb\|EDY27680.1\| N,n'-diacetylchitobiose-specific phosphotransferase IIA component [Salmo... gi\|205336723, gi... - gi\|205336723\|gb\|EDZ23487.1\| N,n'-diacetylchitobiose-specific phosphotransferase enzyme iiacomponent ... gi\|167991866, gi... - gi\|205329682\|gb\|EDZ16446.1\| N,n'-diacetylchitobiose-specific phosphotransferase enzyme iiacomponent ... gi\|168233232, gi... - gi\|205332683\|gb\|EDZ19447.1\| N,n'-diacetylchitobiose-specific phosphotransferase enzyme iiacomponent ... gi\|161614281, gi... - gi\|161614281\|ref\|YP_001588246.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA... gi\|167552330, gi... - gi\|205322957\|gb\|EDZ10796.1\| N,n'-diacetylchitobiose-specific phosphotransferase enzyme iiacomponent ... gi\|206708980, gi... - gi\|207857177\|ref\|YP_002243828.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA... gi\|204323200, gi... - gi\|204927858\|ref\|ZP_03219059.1\| N,n'-diacetylchitobiose-specific phosphotransferase enzyme iiacompon... gi\|205352961, gi... - gi\|205352961\|ref\|YP_002226762.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA... lcl\|NC_016856.1_... - [gene=celC] [protein=PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA] [protein_i... gi\|197940268, gi... - gi\|198245752\|ref\|YP_002215810.1\| N,n'-diacetylchitobiose-specific phosphotransferase enzyme iiacompo... gi\|200389919, gi... - gi\|200389919\|ref\|ZP_03216530.1\| N,n'-diacetylchitobiose-specific phosphotransferase enzyme iiacompon... gi\|197262242, gi... - gi\|197262242\|ref\|ZP_03162316.1\| PTS system, Lactose/Cellobiose specific IIA subunit [Salmonella ente... gi\|197362623, gi... - gi\|197362623\|ref\|YP_002142260.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA... gi\|194737684, gi... - gi\|194737684\|ref\|YP_002114334.1\| N,n'-diacetylchitobiose-specific phosphotransferase enzyme iiacompo... gi\|197249987, gi... - gi\|197249987\|ref\|YP_002146721.1\| N,n'-diacetylchitobiose-specific phosphotransferase enzyme iiacompo... gi\|194449994, gi... - gi\|194449994\|ref\|YP_002045322.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA... gi\|194456013, gi... - gi\|194469649\|ref\|ZP_03075633.1\| N,n'-diacetylchitobiose-specific phosphotransferase enzyme iiacompon... gi\|16764665, gi\|... - gi\|16764665\|ref\|NP_460280.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA [Sa... gi\|238910867 - gi\|238910867\|ref\|ZP_04654704.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA ... gi\|62127538, gi\|... - gi\|62179905\|ref\|YP_216322.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA [Sa... gi\|56413700, gi\|... - gi\|56413700\|ref\|YP_150775.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA [Sa...	142.0	[0..36]	[150..1]
gi\|117672813, gi... - gi\|77629962\|ref\|ZP_00792548.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ...	141.0	[0..36]	[150..1]
gi\|25288002 - pir\|\|AH0326 protein-Npi-phosphohistidine-sugar phosphotransferase (EC 2.7.1.69) IIA component [impor... gi\|45442265, gi\|... - gi\|45442265\|ref\|NP_993804.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA [Ye... gi\|165992649, gi... - gi\|166008267\|ref\|ZP_02229165.1\| PTS system, cellobiose specific IIA subunit [Yersinia pestis biovar ... gi\|22125153, gi\|... - gi\|22125153\|ref\|NP_668576.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA [Ye... gi\|165922877, gi... - gi\|165925270\|ref\|ZP_02221102.1\| PTS system, cellobiose specific IIA subunit [Yersinia pestis biovar ... gi\|115348364, gi... - gi\|218929753\|ref\|YP_002347628.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA... gi\|167399312, gi... - gi\|167399312\|ref\|ZP_02304836.1\| PTS system, cellobiose specific IIA subunit [Yersinia pestis biovar ... gi\|51597245, gi\|... - gi\|51597245\|ref\|YP_071436.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA [Ye... gi\|166212353, gi... - gi\|166212353\|ref\|ZP_02238388.1\| PTS system, cellobiose specific IIA subunit [Yersinia pestis biovar ... gi\|167423658, gi... - gi\|167423658\|ref\|ZP_02315411.1\| PTS system, cellobiose specific IIA subunit [Yersinia pestis biovar ... gi\|166960651, gi... - gi\|167421162\|ref\|ZP_02312915.1\| PTS system, cellobiose specific IIA subunit [Yersinia pestis biovar ... gi\|149291842, gi... - gi\|149365429\|ref\|ZP_01887464.1\| PTS system, cellobiose-specific IIA component [Yersinia pestis CA88-... gi\|108811329, gi... - gi\|229901576\|ref\|ZP_04516698.1\| PTS system, cellobiose-specific IIA component [Yersinia pestis Nepal... gi\|145210572, gi... - gi\|145598876\|ref\|YP_001162952.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA... gi\|108808403, gi... - gi\|108808403\|ref\|YP_652319.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA [Y... gi\|89102197, gi\|... - gi\|89102197\|ref\|ZP_01174850.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ... Q667R2\|Q667R2_YERPS - PTS system, cellobiose-specific IIA component - Yersinia pseudotuberculosis gi\|229694603, gi... - gi\|229838237\|ref\|ZP_04458396.1\| PTS system, cellobiose-specific IIA component [Yersinia pestis biova... gi\|170023392, gi... - gi\|170023392\|ref\|YP_001719897.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA... gi\|229895568, gi... - gi\|229895568\|ref\|ZP_04510739.1\| PTS system, cellobiose-specific IIA component [Yersinia pestis Pesto... gi\|167467829 - gi\|167467829\|ref\|ZP_02332533.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA ... gi\|229898802, gi... - gi\|229898802\|ref\|ZP_04513947.1\| PTS system, cellobiose-specific IIA component [Yersinia pestis biova... gi\|186699373, gi... - gi\|186896347\|ref\|YP_001873459.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA...	141.0	[0..36]	[150..1]
gi\|238796688, gi... - gi\|77961647\|ref\|ZP_00825480.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ...	139.0	[0..36]	[150..1]
gi\|29137286, gi\|... - gi\|29141658\|ref\|NP_805000.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA [Sa... gi\|16760581 - gi\|16760581\|ref\|NP_456198.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA [Sa... gi\|16502877, gi\|... - gi\|25287985\|pir\|\|AG0708 phosphoenolpyruvate dependent phosphotransferase enzyme III-cellobiose [impo... gi\|213610103 - gi\|213610103\|ref\|ZP_03369929.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA ... gi\|213580977 - gi\|213580977\|ref\|ZP_03362803.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA ... gi\|213427487 - gi\|213427487\|ref\|ZP_03360237.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA ... gi\|213162887 - gi\|213162887\|ref\|ZP_03348597.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA ... gi\|214002916 - gi\|214002916\|ref\|ZP_03413651.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA ... gi\|213980856 - gi\|213980856\|ref\|ZP_03408115.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA ... gi\|213852606 - gi\|213852606\|ref\|ZP_03382138.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA ... gi\|213646014 - gi\|213646014\|ref\|ZP_03376067.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA ...	139.0	[0..36]	[150..1]

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Predicted Domain #1

Region A:
Residues: [1-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLIKKRAKK ISLTPEILID AGTGNLAGKK REERCMMDLD NIPDTQTEAE ELEEVVMGLI  60
   61 INSGQARSLA YAALKQAKQG DFAAAKAMMD QSRMALNEAH LVQTKLIEGD AGEGKMKVSL 120
  121 VLVHAQDHLM TSMLARELIT ELIELHEKLK A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.154902
Match:	1wcrA
Description:	Trimeric Structure of the Enzyme IIA from Escherichia coli Phosphotransferase System Specific for N,N'-Diacetylchitobiose
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits