YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24051533, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	225 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24051533, gi|....

Description	E-value	Query Range	Subject Range
gi\|62127781, gi\|... - gi\|62180148\|ref\|YP_216565.1\| nitrate reductase 2, gamma subunit [Salmonella enterica subsp. enterica...	241.0	[0..1]	[224..231]
NARX_MYCTU - Nitrate reductase-like protein NarX OS=Mycobacterium tuberculosis GN=narX PE=1 SV=2 NARX_MYCTO - Nitrate reductase-like protein NarX OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=nar... NARX_MYCTU - Nitrate reductase-like protein NarX OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=nar... gi\|148661535, gi... - gi\|167968650\|ref\|ZP_02550927.1\| nitrate reductase narX [Mycobacterium tuberculosis H37Ra], gi\|148661... gi\|215411386 - gi\|215411386\|ref\|ZP_03420194.1\| nitrate reductase narX [Mycobacterium tuberculosis 94_M4241A] gi\|253799222, gi... - gi\|253799222\|ref\|YP_003032223.1\| nitrate reductase narX [Mycobacterium tuberculosis KZN 1435], gi\|25... gi\|215403956 - gi\|215403956\|ref\|ZP_03416137.1\| nitrate reductase narX [Mycobacterium tuberculosis 02_1987] gi\|254550749 - gi\|254550749\|ref\|ZP_05141196.1\| nitrate reductase narX [Mycobacterium tuberculosis '98-R604 INH-RIF-... gi\|254815534 - gi\|254815534\|ref\|ZP_05220535.1\| nitrate reductase narX [Mycobacterium tuberculosis KZN 4207] gi\|76784529, gi\|... - gi\|76784529\|ref\|ZP_00771713.1\| COG5013: Nitrate reductase alpha subunit [Mycobacterium tuberculosis ... gi\|218753446 - gi\|218753446\|ref\|ZP_03532242.1\| nitrate reductase narX [Mycobacterium tuberculosis GM 1503] gi\|255096514 - gi\|255096514\|ref\|ZP_05325992.1\| nitrate reductase narX [Mycobacterium tuberculosis KZN 605]	222.0	[0..2]	[224..415]
gi\|121493291, gi... - gi\|121637644\|ref\|YP_977867.1\| putative nitrate reductase NarX [Mycobacterium bovis BCG str. Pasteur ... gi\|224990119, gi... - gi\|224990119\|ref\|YP_002644806.1\| putative nitrate reductase [Mycobacterium bovis BCG str. Tokyo 172]... gi\|31792924, gi\|... - gi\|31792924\|ref\|NP_855417.1\| nitrate reductase NarX [Mycobacterium bovis AF2122/97], gi\|31618515\|emb... gi\|6651231 - gi\|6651231\|gb\|AAF22229.1\|AF149772_1 fused nitrate reductase [Mycobacterium bovis BCG]	221.0	[0..2]	[224..415]
gi\|219668884, gi... - gi\|68206532\|ref\|ZP_00558718.1\| 4Fe-4S ferredoxin, iron-sulfur binding domain:Protein of unknown func... gi\|89333907, gi\|... - gi\|89894459\|ref\|YP_517946.1\| hypothetical protein DSY1713 [Desulfitobacterium hafniense Y51], gi\|893...	206.0	[0..2]	[218..6]
gi\|145295325, gi... - gi\|145295325\|ref\|YP_001138146.1\| hypothetical protein cgR_1265 [Corynebacterium glutamicum R], gi\|14... gi\|62390074, gi\|... - gi\|62390074\|ref\|YP_225476.1\| respiratory nitrate reductase 2 gamma chain [Corynebacterium glutamicum...	205.0	[0..1]	[225..1]
gi\|110343051, gi... - gi\|110641459\|ref\|YP_669189.1\| respiratory nitrate reductase 1 gamma chain [Escherichia coli 536], gi...	205.0	[0..1]	[225..1]
gi\|56413317, gi\|... - gi\|56413317\|ref\|YP_150392.1\| respiratory nitrate reductase 1 gamma chain [Salmonella enterica subsp.... gi\|224468276, gi... - gi\|224583749\|ref\|YP_002637547.1\| respiratory nitrate reductase 1 gamma chain [Salmonella enterica su... gi\|16420290, gi\|... - gi\|16765102\|ref\|NP_460717.1\| nitrate reductase 1 gamma subunit [Salmonella typhimurium LT2], gi\|1642... gi\|205272352, gi... - gi\|205352571\|ref\|YP_002226372.1\| respiratory nitrate reductase 1 gamma chain [Salmonella enterica su... gi\|207856732, gi... - gi\|207856732\|ref\|YP_002243383.1\| respiratory nitrate reductase 1 gamma chain [Salmonella enterica su... gi\|199603278, gi... - gi\|200390833\|ref\|ZP_03217444.1\| respiratory nitrate reductase, gamma subunit [Salmonella enterica su... gi\|204323222, gi... - gi\|204927880\|ref\|ZP_03219081.1\| respiratory nitrate reductase, gamma subunit [Salmonella enterica su... gi\|197362242, gi... - gi\|197362242\|ref\|YP_002141879.1\| respiratory nitrate reductase 1 gamma chain [Salmonella enterica su... gi\|198246249, gi... - gi\|198246249\|ref\|YP_002215384.1\| respiratory nitrate reductase, gamma subunit [Salmonella enterica s... gi\|194711219, gi... - gi\|194735717\|ref\|YP_002114790.1\| respiratory nitrate reductase, gamma subunit [Salmonella enterica s... gi\|197262510, gi... - gi\|197262510\|ref\|ZP_03162584.1\| respiratory nitrate reductase, gamma subunit [Salmonella enterica su... lcl\|NC_016856.1_... - [gene=narI] [protein=nitrate reductase 1 subunit gamma] [protein_id=YP_005237688.1] [location=comple... gi\|194449443, gi... - gi\|194449443\|ref\|YP_002045804.1\| respiratory nitrate reductase, gamma subunit [Salmonella enterica s... gi\|194457509, gi... - gi\|194471145\|ref\|ZP_03077129.1\| respiratory nitrate reductase, gamma subunit [Salmonella enterica su... gi\|168820497, gi... - gi\|205342715\|gb\|EDZ29479.1\| respiratory nitrate reductase, gamma subunit [Salmonella enterica subsp.... gi\|194446028, gi... - gi\|194446028\|ref\|YP_002041011.1\| respiratory nitrate reductase, gamma subunit [Salmonella enterica s... gi\|205339407, gi... - gi\|205339407\|gb\|EDZ26171.1\| respiratory nitrate reductase, gamma subunit [Salmonella enterica subsp.... gi\|195634253, gi... - gi\|195634253\|gb\|EDX52605.1\| respiratory nitrate reductase, gamma subunit [Salmonella enterica subsp.... gi\|168233789, gi... - gi\|205332145\|gb\|EDZ18909.1\| respiratory nitrate reductase, gamma subunit [Salmonella enterica subsp.... gi\|197289303, gi... - gi\|197289303\|gb\|EDY28670.1\| respiratory nitrate reductase, gamma subunit [Salmonella enterica subsp.... gi\|205321755, gi... - gi\|205321755\|gb\|EDZ09594.1\| respiratory nitrate reductase, gamma subunit [Salmonella enterica subsp.... gi\|167993201, gi... - gi\|205328634\|gb\|EDZ15398.1\| respiratory nitrate reductase, gamma subunit [Salmonella enterica subsp....	204.0	[0..1]	[225..1]
gi\|82544318, gi\|... - gi\|82544318\|ref\|YP_408265.1\| nitrate reductase 1 cytochrome b(NR), gamma subunit [Shigella boydii Sb...	204.0	[0..1]	[225..1]
gi\|38199368 - gi\|38199368\|emb\|CAE49010.1\| Putative nitrate reductase gamma chain [Corynebacterium diphtheriae] gi\|38233109 - gi\|38233109\|ref\|NP_938876.1\| putative nitrate reductase gamma chain [Corynebacterium diphtheriae NCT...	203.0	[0..1]	[225..1]
gi\|188490559, gi... - gi\|75512581\|ref\|ZP_00735104.1\| COG2181: Nitrate reductase gamma subunit [Escherichia coli 53638], gi... gi\|82776917, gi\|... - gi\|82776917\|ref\|YP_403266.1\| cryptic nitrate reductase 2, gamma subunit [Shigella dysenteriae Sd197]...	203.0	[0..1]	[224..2]

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Predicted Domain #1

Region A:
Residues: [1-225]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFLNMFFFD IYPYIAGAVF LIGSWLRYDY GQYTWRAASS QMLDRKGMNL ASNLFHIGIL  60
   61 GIFVGHFFGM LTPHWMYEAW LPIEVKQKMA MFAGGASGVL CLIGGVLLLK RRMFSPRVRA 120
  121 TTTGADILIL SLLVIQCTLG LLTIPFSAQH MDGSEMMKLV GWAQSVVTFH GGASQHLDGV 180
  181 AFIFRLHLVL GMTLFLLFPF SRLVHIWSVP VEYLTRKYQL VRARH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.30103
Match:	1q16C
Description:	Crystal structure of Nitrate Reductase A, NarGHI, from Escherichia coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nitrate reductase activity	8.42060418947243	bayes_pls_golite062009
oxidoreductase activity, acting on other nitrogenous compounds as donors	7.2464995846242	bayes_pls_golite062009
binding	1.18350763063367	bayes_pls_golite062009
electron carrier activity	1.14948153252384	bayes_pls_golite062009
catalytic activity	0.434711796157625	bayes_pls_golite062009
oxidoreductase activity	0.34569235854639	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: