YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24051487, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	95 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24051487, gi|....

Description	E-value	Query Range	Subject Range
gi\|110805195, gi... - gi\|110805195\|ref\|YP_688715.1\| hypothetical protein SFV_1203 [Shigella flexneri 5 str. 8401], gi\|1106...	100.0	[0..1]	[95..1]
gi\|91210409, gi\|... - gi\|91210409\|ref\|YP_540395.1\| transglycosylase associated protein [Escherichia coli UTI89], gi\|910719... gi\|226899908, gi... - gi\|237705151\|ref\|ZP_04535632.1\| transglycosylase associated protein [Escherichia sp. 3_2_53FAA], gi\|... gi\|26247510, gi\|... - gi\|26247510\|ref\|NP_753550.1\| transglycosylase associated protein [Escherichia coli CFT073], gi\|26107...	98.0	[0..1]	[95..1]
gi\|78390589, gi\|... - gi\|78492161\|ref\|ZP_00844398.1\| Transglycosylase-associated protein [Rhodopseudomonas palustris BisB1...	91.0	[0..11]	[95..45]
gi\|74311725, gi\|... - gi\|74311725\|ref\|YP_310144.1\| transglycosylase associated protein [Shigella sonnei Ss046], gi\|7385520...	87.0	[0..1]	[83..1]
gi\|67544650, gi\|... - gi\|67544650\|ref\|ZP_00422577.1\| Transglycosylase-associated protein [Burkholderia vietnamiensis G4], ...	86.0	[0..8]	[95..39]
gi\|111280999, gi... - gi\|111618532\|ref\|ZP_01405554.1\| membrane protein-like [Acidovorax avenae subsp. citrulli AAC00-1], g...	80.0	[0..28]	[95..119]
gi\|27351079, gi\|... - gi\|27377933\|ref\|NP_769462.1\| hypothetical protein bsr2822 [Bradyrhizobium japonicum USDA 110], gi\|27...	80.0	[0..10]	[95..1]
gi\|114326808, gi... - gi\|114326808\|ref\|YP_743965.1\| integral membrane protein [Granulibacter bethesdensis CGDNIH1], gi\|114...	79.0	[0..4]	[95..11]
gi\|25319825 - pir\|\|AC0145 probable membrane protein YPO1181 [imported] - Yersinia pestis (strain CO92) gi\|15979244, gi\|... - gi\|218928344\|ref\|YP_002346219.1\| hypothetical protein YPO1181 [Yersinia pestis CO92], gi\|16121476\|re... gi\|45440793, gi\|... - gi\|45440793\|ref\|NP_992332.1\| hypothetical protein YP_0955 [Yersinia pestis biovar Microtus str. 9100... gi\|149291198, gi... - gi\|149366824\|ref\|ZP_01888858.1\| putative membrane protein [Yersinia pestis CA88-4125], gi\|149291198\|...	79.0	[0..12]	[94..26]
gi\|93358700, gi\|... - gi\|94314848\|ref\|YP_588057.1\| transglycosylase-associated protein [Ralstonia metallidurans CH34], gi\|...	77.0	[0..12]	[95..2]

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Predicted Domain #1

Region A:
Residues: [1-95]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPIHRNEGL NMGIIAWIIF GLIAGIIGKL IMPGRDGGGF FLTCILGIVG AVVGGWLATM  60
   61 FGIDGSISGF NLHSFLVAVV GAILVLGVFR LLRRE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	20.065502
Match:	PF04226.4
Description:	No description for PF04226.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits